miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25729 5' -53.4 NC_005337.1 + 13277 0.66 0.958487
Target:  5'- aGGCug-CCgaGGGCgaugcgCAGGAGGGCGGg -3'
miRNA:   3'- -CUGcaaGGa-CCUGaa----GUCCUUCCGCU- -5'
25729 5' -53.4 NC_005337.1 + 75981 0.66 0.958487
Target:  5'- cGCGUUCCUGGAgaacaacaaCUUCAGGuaccAGuuGAu -3'
miRNA:   3'- cUGCAAGGACCU---------GAAGUCCu---UCcgCU- -5'
25729 5' -53.4 NC_005337.1 + 128748 0.66 0.946083
Target:  5'- uGGCGUgCCUGGACgauacGGAaagaggcgcAGGCGGa -3'
miRNA:   3'- -CUGCAaGGACCUGaagu-CCU---------UCCGCU- -5'
25729 5' -53.4 NC_005337.1 + 69080 0.67 0.943338
Target:  5'- cGGCG-UCCUGGcguggaACUacuaccucuccugcCGGGAGGGCGAg -3'
miRNA:   3'- -CUGCaAGGACC------UGAa-------------GUCCUUCCGCU- -5'
25729 5' -53.4 NC_005337.1 + 93683 0.67 0.924977
Target:  5'- cAUGUUCCUGGACUUCuucgccaGCGAg -3'
miRNA:   3'- cUGCAAGGACCUGAAGuccuuc-CGCU- -5'
25729 5' -53.4 NC_005337.1 + 92679 0.67 0.919876
Target:  5'- cGACGUgcucaccuUCCUGGGCggCGGcGAccucuacaacggcGGGCGGu -3'
miRNA:   3'- -CUGCA--------AGGACCUGaaGUC-CU-------------UCCGCU- -5'
25729 5' -53.4 NC_005337.1 + 109610 0.67 0.914571
Target:  5'- cGGCGgaaggCCUcGGugUcCAGGAAGGCc- -3'
miRNA:   3'- -CUGCaa---GGA-CCugAaGUCCUUCCGcu -5'
25729 5' -53.4 NC_005337.1 + 1008 0.68 0.90844
Target:  5'- gGGCGUcgCCUGGAggccgucgaaUUUCAcuuugcgcGGGAGGCGGg -3'
miRNA:   3'- -CUGCAa-GGACCU----------GAAGU--------CCUUCCGCU- -5'
25729 5' -53.4 NC_005337.1 + 1008 0.68 0.90844
Target:  5'- gGGCGUcgCCUGGAggccgucgaaUUUCAcuuugcgcGGGAGGCGGg -3'
miRNA:   3'- -CUGCAa-GGACCU----------GAAGU--------CCUUCCGCU- -5'
25729 5' -53.4 NC_005337.1 + 109501 0.68 0.902059
Target:  5'- cGCGUaCgUGGugaUCAGGAAGGUGAg -3'
miRNA:   3'- cUGCAaGgACCugaAGUCCUUCCGCU- -5'
25729 5' -53.4 NC_005337.1 + 59111 0.68 0.900097
Target:  5'- --aGUUCCggugcgUGGACUUCGGGAAGuucuaccugcccguGCGGu -3'
miRNA:   3'- cugCAAGG------ACCUGAAGUCCUUC--------------CGCU- -5'
25729 5' -53.4 NC_005337.1 + 62295 0.68 0.895432
Target:  5'- cGAUGUUCUUGGACacguacugCAGGAGGuuGCGc -3'
miRNA:   3'- -CUGCAAGGACCUGaa------GUCCUUC--CGCu -5'
25729 5' -53.4 NC_005337.1 + 47517 0.68 0.888563
Target:  5'- -cCGUacaUCCUcaACUUCGGGAAGGUGGu -3'
miRNA:   3'- cuGCA---AGGAccUGAAGUCCUUCCGCU- -5'
25729 5' -53.4 NC_005337.1 + 66245 0.69 0.858752
Target:  5'- aGCGUUCgaagCUGGACUUCaaGGuGAAGcGCGAc -3'
miRNA:   3'- cUGCAAG----GACCUGAAG--UC-CUUC-CGCU- -5'
25729 5' -53.4 NC_005337.1 + 83113 0.69 0.853972
Target:  5'- uGAUGUUCCgcgcgucgcucugcgUGGACUUgAGGuagucGGCGAu -3'
miRNA:   3'- -CUGCAAGG---------------ACCUGAAgUCCuu---CCGCU- -5'
25729 5' -53.4 NC_005337.1 + 108712 0.7 0.78927
Target:  5'- -gUGUUCCUGGAggUgGGGucGGCGGa -3'
miRNA:   3'- cuGCAAGGACCUgaAgUCCuuCCGCU- -5'
25729 5' -53.4 NC_005337.1 + 47160 0.71 0.759525
Target:  5'- aGCGUcaagcagUCCUcGGACUUCAcGAAGGUGGa -3'
miRNA:   3'- cUGCA-------AGGA-CCUGAAGUcCUUCCGCU- -5'
25729 5' -53.4 NC_005337.1 + 30245 0.71 0.74071
Target:  5'- aGACGUUCCgcgcgaUGGcgucgcccuGCUcCAGGAAGGCGu -3'
miRNA:   3'- -CUGCAAGG------ACC---------UGAaGUCCUUCCGCu -5'
25729 5' -53.4 NC_005337.1 + 94733 0.72 0.730658
Target:  5'- uGGCGUUCuugacggugacgCUGGACUcCAGGuAGGGCGu -3'
miRNA:   3'- -CUGCAAG------------GACCUGAaGUCC-UUCCGCu -5'
25729 5' -53.4 NC_005337.1 + 64778 0.72 0.710294
Target:  5'- aGGCGUUCCUGGACUUCGaguucgccGAcGGgGAc -3'
miRNA:   3'- -CUGCAAGGACCUGAAGUc-------CUuCCgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.