miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25731 5' -56 NC_005337.1 + 69653 0.66 0.894186
Target:  5'- aGGAGGAGGacuucGUGGCGGCGcUGgAGg -3'
miRNA:   3'- -CCUCUUUCgc---CACCGUCGCuGCgUCa -5'
25731 5' -56 NC_005337.1 + 7052 0.66 0.894186
Target:  5'- cGGGGcgGGCGGcggGGUuGCGcGCGUAGa -3'
miRNA:   3'- -CCUCuuUCGCCa--CCGuCGC-UGCGUCa -5'
25731 5' -56 NC_005337.1 + 32006 0.66 0.894186
Target:  5'- uGGAGuuGGCGuacaUGGCcacGGUGACGCAc- -3'
miRNA:   3'- -CCUCuuUCGCc---ACCG---UCGCUGCGUca -5'
25731 5' -56 NC_005337.1 + 106236 0.66 0.894186
Target:  5'- --uGgcGGCGGUcgcgugccggcGGCAgGCGAUGCAGg -3'
miRNA:   3'- ccuCuuUCGCCA-----------CCGU-CGCUGCGUCa -5'
25731 5' -56 NC_005337.1 + 19423 0.66 0.887388
Target:  5'- cGGAGAc-GCGGUcgcggaGGUAGUccucGGCGUAGUg -3'
miRNA:   3'- -CCUCUuuCGCCA------CCGUCG----CUGCGUCA- -5'
25731 5' -56 NC_005337.1 + 38589 0.66 0.887388
Target:  5'- -aAGGAGGC-GUGGC-GCGAgCGCAGc -3'
miRNA:   3'- ccUCUUUCGcCACCGuCGCU-GCGUCa -5'
25731 5' -56 NC_005337.1 + 39613 0.66 0.887388
Target:  5'- cGGGcGGGAGCGGaucgucucgcgGGCcauguacacgcAGCGGCGCGGc -3'
miRNA:   3'- -CCU-CUUUCGCCa----------CCG-----------UCGCUGCGUCa -5'
25731 5' -56 NC_005337.1 + 32306 0.66 0.887388
Target:  5'- aGAGGAAGCGGaa-CAGCGAgcgGCAGg -3'
miRNA:   3'- cCUCUUUCGCCaccGUCGCUg--CGUCa -5'
25731 5' -56 NC_005337.1 + 4904 0.66 0.887388
Target:  5'- cGGAGAAcgGGCGGUGGa--CGACGg--- -3'
miRNA:   3'- -CCUCUU--UCGCCACCgucGCUGCguca -5'
25731 5' -56 NC_005337.1 + 59869 0.66 0.887388
Target:  5'- cGGuAGAcgAAGCGGUGGCGcugauGUGcUGCAGc -3'
miRNA:   3'- -CC-UCU--UUCGCCACCGU-----CGCuGCGUCa -5'
25731 5' -56 NC_005337.1 + 88634 0.66 0.880359
Target:  5'- cGAGAccagcAAGCGGUuccGGUucGGCG-CGCAGa -3'
miRNA:   3'- cCUCU-----UUCGCCA---CCG--UCGCuGCGUCa -5'
25731 5' -56 NC_005337.1 + 31633 0.66 0.880359
Target:  5'- aGGuGuacacGCGGUGGCagaucAGCGAguCGCGGUc -3'
miRNA:   3'- -CCuCuuu--CGCCACCG-----UCGCU--GCGUCA- -5'
25731 5' -56 NC_005337.1 + 71879 0.66 0.880359
Target:  5'- cGAGgcGGCGGUGGUgaaccgcaccAGCGaccuGCGCAc- -3'
miRNA:   3'- cCUCuuUCGCCACCG----------UCGC----UGCGUca -5'
25731 5' -56 NC_005337.1 + 59807 0.66 0.873105
Target:  5'- cGAGGccGuCGGUGGUGGUGagcaccGCGCAGa -3'
miRNA:   3'- cCUCUuuC-GCCACCGUCGC------UGCGUCa -5'
25731 5' -56 NC_005337.1 + 5443 0.66 0.870886
Target:  5'- aGGAGcacGCGGUcgagcaucuccgggGGCAG-GGCGCAGc -3'
miRNA:   3'- -CCUCuuuCGCCA--------------CCGUCgCUGCGUCa -5'
25731 5' -56 NC_005337.1 + 104478 0.66 0.865631
Target:  5'- cGGAGcacGCGGagcacGcGCAGCGGCGaCAGUc -3'
miRNA:   3'- -CCUCuuuCGCCa----C-CGUCGCUGC-GUCA- -5'
25731 5' -56 NC_005337.1 + 127028 0.66 0.865631
Target:  5'- uGGAGAccauGC--UGGCGGCGgGCGCGGa -3'
miRNA:   3'- -CCUCUuu--CGccACCGUCGC-UGCGUCa -5'
25731 5' -56 NC_005337.1 + 79382 0.66 0.862581
Target:  5'- cGGAGGugguGUGGUugagcugcuccacGCGGCGGCGCGGc -3'
miRNA:   3'- -CCUCUuu--CGCCAc------------CGUCGCUGCGUCa -5'
25731 5' -56 NC_005337.1 + 108632 0.66 0.857942
Target:  5'- uGGAGAucgacGCGGccgUGGCGgGCGaccGCGCGGa -3'
miRNA:   3'- -CCUCUuu---CGCC---ACCGU-CGC---UGCGUCa -5'
25731 5' -56 NC_005337.1 + 42575 0.66 0.857942
Target:  5'- uGGAGGccGCGG-GGCucuccgugaaGGCGuCGCGGc -3'
miRNA:   3'- -CCUCUuuCGCCaCCG----------UCGCuGCGUCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.