miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25732 3' -58.5 NC_005337.1 + 57405 0.65 0.794538
Target:  5'- uAGCaugacgAGCGCGcacGCgGCCUacguggacuacgcgCUCCGGCGCAc -3'
miRNA:   3'- -UCG------UCGCGC---UGgUGGA--------------GAGGCUGUGU- -5'
25732 3' -58.5 NC_005337.1 + 45474 0.66 0.788203
Target:  5'- aGGCuGCGCacgaGCC-CgCUCUCCgGACGCAc -3'
miRNA:   3'- -UCGuCGCGc---UGGuG-GAGAGG-CUGUGU- -5'
25732 3' -58.5 NC_005337.1 + 35119 0.66 0.788203
Target:  5'- cGCGGCGCGGaCGCCcagUgCGGCGCAc -3'
miRNA:   3'- uCGUCGCGCUgGUGGag-AgGCUGUGU- -5'
25732 3' -58.5 NC_005337.1 + 68679 0.66 0.788203
Target:  5'- cAGCAGCGCGcucuugGCCugCgcgC-CCGACcCGa -3'
miRNA:   3'- -UCGUCGCGC------UGGugGa--GaGGCUGuGU- -5'
25732 3' -58.5 NC_005337.1 + 92722 0.66 0.788203
Target:  5'- gGGCGGUuCGACgACCUCguggccgcgaCCGACAUc -3'
miRNA:   3'- -UCGUCGcGCUGgUGGAGa---------GGCUGUGu -5'
25732 3' -58.5 NC_005337.1 + 130345 0.66 0.787292
Target:  5'- uGCAGCuCGACgccgcuaCACCUguacCUCCGACugGc -3'
miRNA:   3'- uCGUCGcGCUG-------GUGGA----GAGGCUGugU- -5'
25732 3' -58.5 NC_005337.1 + 125379 0.66 0.779035
Target:  5'- uGUAGaCGCGGCCGCgC-CUgUGGCGCGg -3'
miRNA:   3'- uCGUC-GCGCUGGUG-GaGAgGCUGUGU- -5'
25732 3' -58.5 NC_005337.1 + 64704 0.66 0.779035
Target:  5'- cGCGGUGUGccucuGCCACCUCcgcgCCGA-GCAg -3'
miRNA:   3'- uCGUCGCGC-----UGGUGGAGa---GGCUgUGU- -5'
25732 3' -58.5 NC_005337.1 + 2410 0.66 0.779035
Target:  5'- aGGCAGCG-GACgACCUCggggUCGGgGCc -3'
miRNA:   3'- -UCGUCGCgCUGgUGGAGa---GGCUgUGu -5'
25732 3' -58.5 NC_005337.1 + 132618 0.66 0.779035
Target:  5'- cGCGGCgGCGGCCAagCUCgucgCCGcggGCGCGc -3'
miRNA:   3'- uCGUCG-CGCUGGUg-GAGa---GGC---UGUGU- -5'
25732 3' -58.5 NC_005337.1 + 55961 0.66 0.779035
Target:  5'- cAGCuuGGCGCgGGCCACCUCcCCagccuggaguacGGCGCc -3'
miRNA:   3'- -UCG--UCGCG-CUGGUGGAGaGG------------CUGUGu -5'
25732 3' -58.5 NC_005337.1 + 35669 0.66 0.779035
Target:  5'- aAGCuGCGCcaggaggaGGCCGCCUUcgaCCGGCugGc -3'
miRNA:   3'- -UCGuCGCG--------CUGGUGGAGa--GGCUGugU- -5'
25732 3' -58.5 NC_005337.1 + 12941 0.66 0.779035
Target:  5'- uGCGGCGCGucaACCGUCUCaucauuugggUCCGAgGCGg -3'
miRNA:   3'- uCGUCGCGC---UGGUGGAG----------AGGCUgUGU- -5'
25732 3' -58.5 NC_005337.1 + 115610 0.66 0.769736
Target:  5'- gGGCuGCGCGgguacGCCACCg--CCGACcugGCGa -3'
miRNA:   3'- -UCGuCGCGC-----UGGUGGagaGGCUG---UGU- -5'
25732 3' -58.5 NC_005337.1 + 98053 0.66 0.769736
Target:  5'- cGGgAGCGCG-CCGCgg--CCGGCGCAa -3'
miRNA:   3'- -UCgUCGCGCuGGUGgagaGGCUGUGU- -5'
25732 3' -58.5 NC_005337.1 + 96964 0.66 0.769736
Target:  5'- cGC-GCGCGACCAgCUcCUCgCGGC-CGg -3'
miRNA:   3'- uCGuCGCGCUGGUgGA-GAG-GCUGuGU- -5'
25732 3' -58.5 NC_005337.1 + 1710 0.66 0.769736
Target:  5'- -aCAGCGacaCGGCCACCgugCCGACgACAa -3'
miRNA:   3'- ucGUCGC---GCUGGUGGagaGGCUG-UGU- -5'
25732 3' -58.5 NC_005337.1 + 9471 0.66 0.769736
Target:  5'- -cCGGCGCGuCCACCg--CCGGCcCAu -3'
miRNA:   3'- ucGUCGCGCuGGUGGagaGGCUGuGU- -5'
25732 3' -58.5 NC_005337.1 + 133504 0.66 0.760316
Target:  5'- cGGCGGCGCGcagcacaugGCCGCCgUCgaggCCGcggGCGCc -3'
miRNA:   3'- -UCGUCGCGC---------UGGUGG-AGa---GGC---UGUGu -5'
25732 3' -58.5 NC_005337.1 + 93716 0.66 0.760316
Target:  5'- cGGCGGCuCGACgCgGCCUCcagcgacccgCCGGCGCAa -3'
miRNA:   3'- -UCGUCGcGCUG-G-UGGAGa---------GGCUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.