miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25732 5' -48.5 NC_005337.1 + 72611 0.65 0.999043
Target:  5'- cGCggGCGUGGUGGugcccgccacgaacaAGUccaucuuccucagcgAGcCGUACAGCu -3'
miRNA:   3'- -UGa-CGCACUACU---------------UCA---------------UCaGCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 111481 0.66 0.998897
Target:  5'- uACUcGCG-GAUGAAGaacuccgaguccucGUUGUACAGCc -3'
miRNA:   3'- -UGA-CGCaCUACUUCau------------CAGCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 30710 0.66 0.998874
Target:  5'- --cGCG-GAacuccgccggGAAGUcgcagaAGUCGUACAGCg -3'
miRNA:   3'- ugaCGCaCUa---------CUUCA------UCAGCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 71525 0.66 0.998628
Target:  5'- cGCcGCGUcGcgGAGcUGGUCGUGCccAGCa -3'
miRNA:   3'- -UGaCGCA-CuaCUUcAUCAGCAUG--UCG- -5'
25732 5' -48.5 NC_005337.1 + 37226 0.66 0.998628
Target:  5'- cGCgUGCGUGGcgaUGAGGUGGcacgCGguCAGCg -3'
miRNA:   3'- -UG-ACGCACU---ACUUCAUCa---GCauGUCG- -5'
25732 5' -48.5 NC_005337.1 + 16059 0.66 0.998628
Target:  5'- cACUGCaUGAUGAc---GUCGgGCGGCu -3'
miRNA:   3'- -UGACGcACUACUucauCAGCaUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 11186 0.66 0.998628
Target:  5'- aACUGCGc---GAAGUAcaUCGUGCGGUg -3'
miRNA:   3'- -UGACGCacuaCUUCAUc-AGCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 58534 0.66 0.998628
Target:  5'- -aUGC-UGGUGAcGUuGUCGUcccGCAGCg -3'
miRNA:   3'- ugACGcACUACUuCAuCAGCA---UGUCG- -5'
25732 5' -48.5 NC_005337.1 + 84237 0.66 0.998628
Target:  5'- cCUGCGggcacuUGGUGAAGagcauggAGUUGUACucuGCg -3'
miRNA:   3'- uGACGC------ACUACUUCa------UCAGCAUGu--CG- -5'
25732 5' -48.5 NC_005337.1 + 67052 0.67 0.997598
Target:  5'- --aGCGUGgcGAGGUAGUCGccguccAUGGUg -3'
miRNA:   3'- ugaCGCACuaCUUCAUCAGCa-----UGUCG- -5'
25732 5' -48.5 NC_005337.1 + 54200 0.67 0.997598
Target:  5'- aACUcCGUGGUGAGccucGUGGgcgCGgaugACAGCg -3'
miRNA:   3'- -UGAcGCACUACUU----CAUCa--GCa---UGUCG- -5'
25732 5' -48.5 NC_005337.1 + 129058 0.67 0.997136
Target:  5'- --cGCGUGugucggaGAGGUGGUCGcGCuGCu -3'
miRNA:   3'- ugaCGCACua-----CUUCAUCAGCaUGuCG- -5'
25732 5' -48.5 NC_005337.1 + 91802 0.67 0.996603
Target:  5'- --cGCGUGAacgGggGgcGUCGUugAacGCg -3'
miRNA:   3'- ugaCGCACUa--CuuCauCAGCAugU--CG- -5'
25732 5' -48.5 NC_005337.1 + 76196 0.67 0.996603
Target:  5'- aGCUGCuGUuguccgccacGGUGucGGUgcGGUUGUGCAGCg -3'
miRNA:   3'- -UGACG-CA----------CUACu-UCA--UCAGCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 106506 0.67 0.996603
Target:  5'- aACUcCGUGGUGuaccuGcGGuUCGUGCAGCa -3'
miRNA:   3'- -UGAcGCACUACuu---CaUC-AGCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 1925 0.67 0.995991
Target:  5'- --aGCGUGuugcagcgGAAGUcGGUCGUGC-GCa -3'
miRNA:   3'- ugaCGCACua------CUUCA-UCAGCAUGuCG- -5'
25732 5' -48.5 NC_005337.1 + 48658 0.67 0.995991
Target:  5'- aGCUGgacgcCGUGAUGAAGgc--CGUgaGCAGCa -3'
miRNA:   3'- -UGAC-----GCACUACUUCaucaGCA--UGUCG- -5'
25732 5' -48.5 NC_005337.1 + 59297 0.67 0.995216
Target:  5'- cCUGCGggucggaGAUGAugcgacuGGUGGg-GUACAGCg -3'
miRNA:   3'- uGACGCa------CUACU-------UCAUCagCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 20012 0.68 0.994495
Target:  5'- uGCUGCGggcgGAaGAGGUGGagGUACGu- -3'
miRNA:   3'- -UGACGCa---CUaCUUCAUCagCAUGUcg -5'
25732 5' -48.5 NC_005337.1 + 35938 0.68 0.994495
Target:  5'- -gUGCGUGAcGAAGUccgugccguugcGGcUCGcGCAGCg -3'
miRNA:   3'- ugACGCACUaCUUCA------------UC-AGCaUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.