miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25732 5' -48.5 NC_005337.1 + 5247 1.14 0.006662
Target:  5'- gACUGCGUGAUGAAGUAGUCGUACAGCg -3'
miRNA:   3'- -UGACGCACUACUUCAUCAGCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 2551 0.88 0.255443
Target:  5'- --cGgGUGAaGAAGUAGUCGUACAGCg -3'
miRNA:   3'- ugaCgCACUaCUUCAUCAGCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 33671 0.83 0.413183
Target:  5'- --gGCGcGcAUGAGGUAGUCGUGCAGCc -3'
miRNA:   3'- ugaCGCaC-UACUUCAUCAGCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 85191 0.77 0.719772
Target:  5'- aGCUGCGcGAUGGAGgcGUuggucuugaacucguUGUACAGCa -3'
miRNA:   3'- -UGACGCaCUACUUCauCA---------------GCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 61615 0.75 0.850783
Target:  5'- gGCUGUGcGA-GAAGUAGcUGUACGGCu -3'
miRNA:   3'- -UGACGCaCUaCUUCAUCaGCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 44686 0.74 0.866327
Target:  5'- aACUGCuGUGAUGGuguuuccGGUGGUgugcucgaCGUGCGGCc -3'
miRNA:   3'- -UGACG-CACUACU-------UCAUCA--------GCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 11828 0.74 0.889823
Target:  5'- cACUGCGcGAUGAAGUcGG-CGUGCAuGUg -3'
miRNA:   3'- -UGACGCaCUACUUCA-UCaGCAUGU-CG- -5'
25732 5' -48.5 NC_005337.1 + 82959 0.74 0.889823
Target:  5'- aGCgGCGUGGacuGGUAGUCGgcCAGCu -3'
miRNA:   3'- -UGaCGCACUacuUCAUCAGCauGUCG- -5'
25732 5' -48.5 NC_005337.1 + 31527 0.73 0.896884
Target:  5'- --gGUGgaUGGUGGgcuGGUAGUUGUACAGCa -3'
miRNA:   3'- ugaCGC--ACUACU---UCAUCAGCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 83131 0.73 0.91022
Target:  5'- uCUGCGUGGacuUGAGGUAGUCG-GCGa- -3'
miRNA:   3'- uGACGCACU---ACUUCAUCAGCaUGUcg -5'
25732 5' -48.5 NC_005337.1 + 68638 0.72 0.930434
Target:  5'- --aGCGUGGcggaggggcggaucuUGggGUGGUugagcgCGUGCAGCa -3'
miRNA:   3'- ugaCGCACU---------------ACuuCAUCA------GCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 121250 0.71 0.952835
Target:  5'- aACU-CGUccucGGUGAAGUAGUCGUcGCAGg -3'
miRNA:   3'- -UGAcGCA----CUACUUCAUCAGCA-UGUCg -5'
25732 5' -48.5 NC_005337.1 + 11024 0.71 0.964478
Target:  5'- gGCUcCGUGAUGAAcauGUGGcCGgcggGCAGCu -3'
miRNA:   3'- -UGAcGCACUACUU---CAUCaGCa---UGUCG- -5'
25732 5' -48.5 NC_005337.1 + 35158 0.7 0.967865
Target:  5'- --cGCGUcgcuGgcGGAGUGGUCGgcgACGGCg -3'
miRNA:   3'- ugaCGCA----CuaCUUCAUCAGCa--UGUCG- -5'
25732 5' -48.5 NC_005337.1 + 35735 0.7 0.971017
Target:  5'- gACgGCGUGGUGGu---GUCGUACGcGCu -3'
miRNA:   3'- -UGaCGCACUACUucauCAGCAUGU-CG- -5'
25732 5' -48.5 NC_005337.1 + 67866 0.7 0.971017
Target:  5'- uGCaGCGcGGUGAGGUuGUCGaggcGCAGCg -3'
miRNA:   3'- -UGaCGCaCUACUUCAuCAGCa---UGUCG- -5'
25732 5' -48.5 NC_005337.1 + 82869 0.7 0.973941
Target:  5'- aACUGCGUGGUGcucagcAGGUucuGGUagcuggagaggcUGUGCAGCu -3'
miRNA:   3'- -UGACGCACUAC------UUCA---UCA------------GCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 5141 0.7 0.976644
Target:  5'- --gGUGUG--GAGGUAGagGUGCAGCg -3'
miRNA:   3'- ugaCGCACuaCUUCAUCagCAUGUCG- -5'
25732 5' -48.5 NC_005337.1 + 71431 0.69 0.981205
Target:  5'- cCUGCGccugcUGGUGGAGUGGUuccggaaguaccaCGUGCcGCa -3'
miRNA:   3'- uGACGC-----ACUACUUCAUCA-------------GCAUGuCG- -5'
25732 5' -48.5 NC_005337.1 + 4129 0.69 0.987169
Target:  5'- --cGCGgacaGAggcaGAAGUAGUUGUACAGg -3'
miRNA:   3'- ugaCGCa---CUa---CUUCAUCAGCAUGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.