miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25733 5' -64 NC_005337.1 + 129226 0.66 0.466499
Target:  5'- cUGCUGuGGCGCGa-CCCCGCugCAu -3'
miRNA:   3'- aACGGCcUCGCGCgcGGGGUGugGUc -5'
25733 5' -64 NC_005337.1 + 9454 0.66 0.484765
Target:  5'- aUGCCcgugcGGAGCaccuccucgcuGCG-GCCCCACuCCAGc -3'
miRNA:   3'- aACGG-----CCUCG-----------CGCgCGGGGUGuGGUC- -5'
25733 5' -64 NC_005337.1 + 104140 0.66 0.466499
Target:  5'- -cGCgUGGAGCGCGUGCaggcggaCCuCACCGa -3'
miRNA:   3'- aaCG-GCCUCGCGCGCGg------GGuGUGGUc -5'
25733 5' -64 NC_005337.1 + 68832 0.66 0.475589
Target:  5'- -cGCCGucGCGCccuggcuccuccGCgacgccccaGCCCCGCGCCGGa -3'
miRNA:   3'- aaCGGCcuCGCG------------CG---------CGGGGUGUGGUC- -5'
25733 5' -64 NC_005337.1 + 29794 0.66 0.4575
Target:  5'- -cGCCGcuGCGCGUGCUCCGCGugcuCCGc -3'
miRNA:   3'- aaCGGCcuCGCGCGCGGGGUGU----GGUc -5'
25733 5' -64 NC_005337.1 + 105235 0.66 0.484765
Target:  5'- aUGgCGGcGUG-GCGCCCC-CACCAc -3'
miRNA:   3'- aACgGCCuCGCgCGCGGGGuGUGGUc -5'
25733 5' -64 NC_005337.1 + 50394 0.66 0.466499
Target:  5'- -gGCgCGGGG-GCGCGCCgCGCGUCGGu -3'
miRNA:   3'- aaCG-GCCUCgCGCGCGGgGUGUGGUC- -5'
25733 5' -64 NC_005337.1 + 133534 0.66 0.466499
Target:  5'- -gGCCGcGGGCGcCGCGCUCuCGC-CCGc -3'
miRNA:   3'- aaCGGC-CUCGC-GCGCGGG-GUGuGGUc -5'
25733 5' -64 NC_005337.1 + 99007 0.66 0.475589
Target:  5'- -cGCCccccgaGGuGCGCGCGgCCUgcgaggcgcuggACGCCAGg -3'
miRNA:   3'- aaCGG------CCuCGCGCGCgGGG------------UGUGGUC- -5'
25733 5' -64 NC_005337.1 + 47533 0.66 0.4575
Target:  5'- gUGCCGGAGCgggaccucGUGgGCCUgAUGCCGc -3'
miRNA:   3'- aACGGCCUCG--------CGCgCGGGgUGUGGUc -5'
25733 5' -64 NC_005337.1 + 67926 0.66 0.484765
Target:  5'- gUGCCGcGGUGguCGCGCUCCACgagcacgugucGCCAGc -3'
miRNA:   3'- aACGGCcUCGC--GCGCGGGGUG-----------UGGUC- -5'
25733 5' -64 NC_005337.1 + 98317 0.66 0.475589
Target:  5'- cUGCCGcGGCG-GCGuCCCUAC-CCGGu -3'
miRNA:   3'- aACGGCcUCGCgCGC-GGGGUGuGGUC- -5'
25733 5' -64 NC_005337.1 + 105779 0.66 0.503367
Target:  5'- gUGCCGcGcGcCGCGCGCCgCGCGgCCGc -3'
miRNA:   3'- aACGGC-CuC-GCGCGCGGgGUGU-GGUc -5'
25733 5' -64 NC_005337.1 + 18463 0.66 0.4575
Target:  5'- cUGgCGGGGagucCGCGCGCCauguCCAgCACCGGc -3'
miRNA:   3'- aACgGCCUC----GCGCGCGG----GGU-GUGGUC- -5'
25733 5' -64 NC_005337.1 + 48726 0.66 0.4575
Target:  5'- gUGCCGGGGCuucucaccGcCGCGCUCaACAuCCAGa -3'
miRNA:   3'- aACGGCCUCG--------C-GCGCGGGgUGU-GGUC- -5'
25733 5' -64 NC_005337.1 + 23068 0.66 0.466499
Target:  5'- -cGCCGGAacGCGgcggcCGUGCCCgGCAUCGu -3'
miRNA:   3'- aaCGGCCU--CGC-----GCGCGGGgUGUGGUc -5'
25733 5' -64 NC_005337.1 + 133570 0.66 0.4575
Target:  5'- -gGCCGcGGGCGUGCGCgcgagcuucgccUCCGCGCgCAa -3'
miRNA:   3'- aaCGGC-CUCGCGCGCG------------GGGUGUG-GUc -5'
25733 5' -64 NC_005337.1 + 74173 0.66 0.475589
Target:  5'- cUGCgGGAG-GCGCGC-UCGgGCCGGg -3'
miRNA:   3'- aACGgCCUCgCGCGCGgGGUgUGGUC- -5'
25733 5' -64 NC_005337.1 + 53265 0.66 0.475589
Target:  5'- -cGcCCGGAcuuCGCGCGCCCgACgaugaACCGGc -3'
miRNA:   3'- aaC-GGCCUc--GCGCGCGGGgUG-----UGGUC- -5'
25733 5' -64 NC_005337.1 + 79434 0.66 0.466499
Target:  5'- -cGCCGG-GCGCGCGUgCauguucuuCACCAu -3'
miRNA:   3'- aaCGGCCuCGCGCGCGgGgu------GUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.