miRNA display CGI


Results 1 - 20 of 197 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25733 5' -64 NC_005337.1 + 2077 0.67 0.42247
Target:  5'- gUGuCCGcGAGCGCGCucgacGCCa-GCGCCAGc -3'
miRNA:   3'- aAC-GGC-CUCGCGCG-----CGGggUGUGGUC- -5'
25733 5' -64 NC_005337.1 + 2223 0.78 0.081767
Target:  5'- -gGCCGcGAGCGCGCGCaggaaCCGCGCgAGg -3'
miRNA:   3'- aaCGGC-CUCGCGCGCGg----GGUGUGgUC- -5'
25733 5' -64 NC_005337.1 + 2350 0.71 0.249705
Target:  5'- --uCCGGGGCcaGCGCGCCgCAgCACCGGu -3'
miRNA:   3'- aacGGCCUCG--CGCGCGGgGU-GUGGUC- -5'
25733 5' -64 NC_005337.1 + 2930 0.67 0.438037
Target:  5'- -cGCCGGAgugccgacgcgcacgGCGCGCaugagcgcggucuccGCCUCGCACuCGGc -3'
miRNA:   3'- aaCGGCCU---------------CGCGCG---------------CGGGGUGUG-GUC- -5'
25733 5' -64 NC_005337.1 + 3299 0.69 0.332832
Target:  5'- gUGUCGuAGCGCGCGUUgcgcacguccacggCCACGCCGGc -3'
miRNA:   3'- aACGGCcUCGCGCGCGG--------------GGUGUGGUC- -5'
25733 5' -64 NC_005337.1 + 4971 0.97 0.003
Target:  5'- gUUGCCGGAGCGCGCGCCCC-CACCAGc -3'
miRNA:   3'- -AACGGCCUCGCGCGCGGGGuGUGGUC- -5'
25733 5' -64 NC_005337.1 + 5799 0.66 0.475589
Target:  5'- -cGcCCGcGAGCaCGCGgucUCCCGCGCCGGu -3'
miRNA:   3'- aaC-GGC-CUCGcGCGC---GGGGUGUGGUC- -5'
25733 5' -64 NC_005337.1 + 6178 0.67 0.42247
Target:  5'- cUUGCCGaaGAGCGCGuUGCCgUACACUu- -3'
miRNA:   3'- -AACGGC--CUCGCGC-GCGGgGUGUGGuc -5'
25733 5' -64 NC_005337.1 + 6396 0.7 0.299883
Target:  5'- -cGCCGGcGcCGCGCGCCaCCAgACUg- -3'
miRNA:   3'- aaCGGCCuC-GCGCGCGG-GGUgUGGuc -5'
25733 5' -64 NC_005337.1 + 6896 0.7 0.299883
Target:  5'- aUGUCGc-GCGCGCGCgggUCCGCGCCGGc -3'
miRNA:   3'- aACGGCcuCGCGCGCG---GGGUGUGGUC- -5'
25733 5' -64 NC_005337.1 + 8650 0.67 0.42247
Target:  5'- gUGCCGGAGCuucaGCGCCUgGCAguCCu- -3'
miRNA:   3'- aACGGCCUCGcg--CGCGGGgUGU--GGuc -5'
25733 5' -64 NC_005337.1 + 8712 0.68 0.35751
Target:  5'- aUGCaGGGGCGUcCGCCCCACGUCGu -3'
miRNA:   3'- aACGgCCUCGCGcGCGGGGUGUGGUc -5'
25733 5' -64 NC_005337.1 + 9360 0.66 0.484765
Target:  5'- -cGCCuGGA-CGCGCGCUgCGCguucgaGCCAGa -3'
miRNA:   3'- aaCGG-CCUcGCGCGCGGgGUG------UGGUC- -5'
25733 5' -64 NC_005337.1 + 9454 0.66 0.484765
Target:  5'- aUGCCcgugcGGAGCaccuccucgcuGCG-GCCCCACuCCAGc -3'
miRNA:   3'- aACGG-----CCUCG-----------CGCgCGGGGUGuGGUC- -5'
25733 5' -64 NC_005337.1 + 9742 0.67 0.448595
Target:  5'- -aGCCuGAagcaGCGCGCGUcggCCgGCGCCGGg -3'
miRNA:   3'- aaCGGcCU----CGCGCGCG---GGgUGUGGUC- -5'
25733 5' -64 NC_005337.1 + 10444 0.74 0.162018
Target:  5'- -cGgCGGuGCGCGCGUCgUGCGCCAGg -3'
miRNA:   3'- aaCgGCCuCGCGCGCGGgGUGUGGUC- -5'
25733 5' -64 NC_005337.1 + 11344 0.67 0.428485
Target:  5'- -gGCCGGGGauggagaagagcCGCGUGgagaugucgaugcuCCCCACGCCGa -3'
miRNA:   3'- aaCGGCCUC------------GCGCGC--------------GGGGUGUGGUc -5'
25733 5' -64 NC_005337.1 + 11738 0.78 0.075656
Target:  5'- -gGCUGcAGCGCGCGUCgCCGCGCCAGg -3'
miRNA:   3'- aaCGGCcUCGCGCGCGG-GGUGUGGUC- -5'
25733 5' -64 NC_005337.1 + 11854 0.66 0.466499
Target:  5'- gUGCCGcaucGGCGCggacagGCGCCgCGCGCCGc -3'
miRNA:   3'- aACGGCc---UCGCG------CGCGGgGUGUGGUc -5'
25733 5' -64 NC_005337.1 + 12056 0.67 0.438911
Target:  5'- -cGuCCGGcGUGCGCGCCgacacguCCGCGCCc- -3'
miRNA:   3'- aaC-GGCCuCGCGCGCGG-------GGUGUGGuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.