miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25734 3' -56 NC_005337.1 + 109592 0.66 0.901751
Target:  5'- cGCACGUUCuCGUacucgCGGCGgaaGGCCUCg -3'
miRNA:   3'- -CGUGCAAGuGCG-----GCUGUgg-UCGGAGa -5'
25734 3' -56 NC_005337.1 + 80011 0.66 0.901751
Target:  5'- cGCGCGgcgcuaaGCGCCGcAC-CCGGCC-Cg -3'
miRNA:   3'- -CGUGCaag----UGCGGC-UGuGGUCGGaGa -5'
25734 3' -56 NC_005337.1 + 37011 0.66 0.901751
Target:  5'- aGCACGUcgaaGCGCCGGCucACC-GCC-Cg -3'
miRNA:   3'- -CGUGCAag--UGCGGCUG--UGGuCGGaGa -5'
25734 3' -56 NC_005337.1 + 95901 0.66 0.901751
Target:  5'- cGCuCGUgcUCGCGgCGACGgCGGCCg-- -3'
miRNA:   3'- -CGuGCA--AGUGCgGCUGUgGUCGGaga -5'
25734 3' -56 NC_005337.1 + 946 0.66 0.901751
Target:  5'- aGCGCGgaCAUGCUGGCGgCGGCg--- -3'
miRNA:   3'- -CGUGCaaGUGCGGCUGUgGUCGgaga -5'
25734 3' -56 NC_005337.1 + 82359 0.66 0.901751
Target:  5'- -aGCGUggcCGCCGACugCacggcgccgagGGCCUCg -3'
miRNA:   3'- cgUGCAaguGCGGCUGugG-----------UCGGAGa -5'
25734 3' -56 NC_005337.1 + 946 0.66 0.901751
Target:  5'- aGCGCGgaCAUGCUGGCGgCGGCg--- -3'
miRNA:   3'- -CGUGCaaGUGCGGCUGUgGUCGgaga -5'
25734 3' -56 NC_005337.1 + 132107 0.66 0.901751
Target:  5'- uGCGCGUcgGCGCCGugcGCGgCAGgCUCc -3'
miRNA:   3'- -CGUGCAagUGCGGC---UGUgGUCgGAGa -5'
25734 3' -56 NC_005337.1 + 21664 0.66 0.901751
Target:  5'- gGCACGUgcUCGCGCUG-CACUA-CCUg- -3'
miRNA:   3'- -CGUGCA--AGUGCGGCuGUGGUcGGAga -5'
25734 3' -56 NC_005337.1 + 123201 0.66 0.901751
Target:  5'- uCGCGgcgGCGaCCGAuCugCGGCCUCg -3'
miRNA:   3'- cGUGCaagUGC-GGCU-GugGUCGGAGa -5'
25734 3' -56 NC_005337.1 + 16574 0.66 0.901751
Target:  5'- uCACGUUCACGCUgugGACGCagUAGCUg-- -3'
miRNA:   3'- cGUGCAAGUGCGG---CUGUG--GUCGGaga -5'
25734 3' -56 NC_005337.1 + 45957 0.66 0.895256
Target:  5'- cGCGCGUggcgucCACGCUGACGuccCCGagcuugauguccGCCUCc -3'
miRNA:   3'- -CGUGCAa-----GUGCGGCUGU---GGU------------CGGAGa -5'
25734 3' -56 NC_005337.1 + 62441 0.66 0.895256
Target:  5'- aGCACGUUgaCGCGCCGcUGCCGGaugaUCa -3'
miRNA:   3'- -CGUGCAA--GUGCGGCuGUGGUCgg--AGa -5'
25734 3' -56 NC_005337.1 + 12061 0.66 0.895256
Target:  5'- -gGCGUgCGCGCCGACAcguCCGcGCC-Cg -3'
miRNA:   3'- cgUGCAaGUGCGGCUGU---GGU-CGGaGa -5'
25734 3' -56 NC_005337.1 + 18650 0.66 0.895256
Target:  5'- -gGCGgcCGCGCCGcCGCCGGCg--- -3'
miRNA:   3'- cgUGCaaGUGCGGCuGUGGUCGgaga -5'
25734 3' -56 NC_005337.1 + 3683 0.66 0.895256
Target:  5'- -uGCG-UCGCGcCCGACG-CGGCUUCUu -3'
miRNA:   3'- cgUGCaAGUGC-GGCUGUgGUCGGAGA- -5'
25734 3' -56 NC_005337.1 + 132828 0.66 0.895256
Target:  5'- cGCgACGUUCACGUgcaCGAuCGCCGGCa--- -3'
miRNA:   3'- -CG-UGCAAGUGCG---GCU-GUGGUCGgaga -5'
25734 3' -56 NC_005337.1 + 77016 0.66 0.893262
Target:  5'- cGCGCGgcCccgugcccgaaccaGCGCCGGUGCaCGGCCUCg -3'
miRNA:   3'- -CGUGCaaG--------------UGCGGCUGUG-GUCGGAGa -5'
25734 3' -56 NC_005337.1 + 10281 0.66 0.888529
Target:  5'- gGCGCGUUCagcauggcgcGCGCauCGGCGCCGuucGCgUCUa -3'
miRNA:   3'- -CGUGCAAG----------UGCG--GCUGUGGU---CGgAGA- -5'
25734 3' -56 NC_005337.1 + 34807 0.66 0.888529
Target:  5'- uGCGCG-UCGCGg-GugGCCAgcGCCUCUa -3'
miRNA:   3'- -CGUGCaAGUGCggCugUGGU--CGGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.