miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25734 3' -56 NC_005337.1 + 737 0.67 0.835327
Target:  5'- aCGCGggCGagaGCgCGGCGCCcgcGGCCUCg -3'
miRNA:   3'- cGUGCaaGUg--CG-GCUGUGG---UCGGAGa -5'
25734 3' -56 NC_005337.1 + 737 0.67 0.835327
Target:  5'- aCGCGggCGagaGCgCGGCGCCcgcGGCCUCg -3'
miRNA:   3'- cGUGCaaGUg--CG-GCUGUGG---UCGGAGa -5'
25734 3' -56 NC_005337.1 + 946 0.66 0.901751
Target:  5'- aGCGCGgaCAUGCUGGCGgCGGCg--- -3'
miRNA:   3'- -CGUGCaaGUGCGGCUGUgGUCGgaga -5'
25734 3' -56 NC_005337.1 + 946 0.66 0.901751
Target:  5'- aGCGCGgaCAUGCUGGCGgCGGCg--- -3'
miRNA:   3'- -CGUGCaaGUGCGGCUGUgGUCGgaga -5'
25734 3' -56 NC_005337.1 + 1727 0.67 0.826924
Target:  5'- cGCACGUUCagcGCGUCGAUGuCCAGgCC-Cg -3'
miRNA:   3'- -CGUGCAAG---UGCGGCUGU-GGUC-GGaGa -5'
25734 3' -56 NC_005337.1 + 2086 0.73 0.541263
Target:  5'- aGCGCGcUCgACGCCaGCGCCAgcGCCUCc -3'
miRNA:   3'- -CGUGCaAG-UGCGGcUGUGGU--CGGAGa -5'
25734 3' -56 NC_005337.1 + 2155 0.74 0.445178
Target:  5'- cGgGCGUUCACGUCGGCACCcAGCg--- -3'
miRNA:   3'- -CgUGCAAGUGCGGCUGUGG-UCGgaga -5'
25734 3' -56 NC_005337.1 + 3023 0.67 0.842729
Target:  5'- aGCGCGUgCGCGCCGAUgugcgcgACCAcguacGCCa-- -3'
miRNA:   3'- -CGUGCAaGUGCGGCUG-------UGGU-----CGGaga -5'
25734 3' -56 NC_005337.1 + 3111 0.68 0.791607
Target:  5'- cCGCGacCGCGaCCGcgGCCGGCCUCg -3'
miRNA:   3'- cGUGCaaGUGC-GGCugUGGUCGGAGa -5'
25734 3' -56 NC_005337.1 + 3317 0.71 0.622711
Target:  5'- cGCACGUcCACgGCC-ACGCCGGCgUCc -3'
miRNA:   3'- -CGUGCAaGUG-CGGcUGUGGUCGgAGa -5'
25734 3' -56 NC_005337.1 + 3633 0.67 0.859383
Target:  5'- uCGCGcgCACGUCcGCGCCcAGCUUCa -3'
miRNA:   3'- cGUGCaaGUGCGGcUGUGG-UCGGAGa -5'
25734 3' -56 NC_005337.1 + 3683 0.66 0.895256
Target:  5'- -uGCG-UCGCGcCCGACG-CGGCUUCUu -3'
miRNA:   3'- cgUGCaAGUGC-GGCUGUgGUCGGAGA- -5'
25734 3' -56 NC_005337.1 + 3966 0.72 0.571517
Target:  5'- aCACGUcCACGUacGCACCGGCCUUg -3'
miRNA:   3'- cGUGCAaGUGCGgcUGUGGUCGGAGa -5'
25734 3' -56 NC_005337.1 + 4171 0.71 0.633002
Target:  5'- aGC-CGUgaugCGuCGCUGACcCCGGCCUCa -3'
miRNA:   3'- -CGuGCAa---GU-GCGGCUGuGGUCGGAGa -5'
25734 3' -56 NC_005337.1 + 4426 1.1 0.002126
Target:  5'- aGCACGUUCACGCCGACACCAGCCUCUa -3'
miRNA:   3'- -CGUGCAAGUGCGGCUGUGGUCGGAGA- -5'
25734 3' -56 NC_005337.1 + 5037 0.72 0.575585
Target:  5'- aGCACGUacagaugcagcggggUCGCGCC-ACAgCAGCgCUCUg -3'
miRNA:   3'- -CGUGCA---------------AGUGCGGcUGUgGUCG-GAGA- -5'
25734 3' -56 NC_005337.1 + 5081 0.76 0.351478
Target:  5'- -gGCGUcCACGaaGGCACCGGCCUCc -3'
miRNA:   3'- cgUGCAaGUGCggCUGUGGUCGGAGa -5'
25734 3' -56 NC_005337.1 + 6150 0.68 0.781463
Target:  5'- cGCGCGUUCACGCgGcagccgcGCACCA-CCa-- -3'
miRNA:   3'- -CGUGCAAGUGCGgC-------UGUGGUcGGaga -5'
25734 3' -56 NC_005337.1 + 6244 0.7 0.663837
Target:  5'- cGCGCGagUCagcgucgcugACGCUGGCGCCGGCgUCc -3'
miRNA:   3'- -CGUGCa-AG----------UGCGGCUGUGGUCGgAGa -5'
25734 3' -56 NC_005337.1 + 6386 0.71 0.612428
Target:  5'- cGCACGcgCuCGCCGGCGCCGcgcGCCa-- -3'
miRNA:   3'- -CGUGCaaGuGCGGCUGUGGU---CGGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.