miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25734 5' -55.8 NC_005337.1 + 117344 0.65 0.909278
Target:  5'- gCGAcgGccaacGUCGGcCGCGUGGacgugcgcacgcucCAGGUGCUg -3'
miRNA:   3'- -GCUuaC-----UAGCU-GCGCGCC--------------GUCCACGA- -5'
25734 5' -55.8 NC_005337.1 + 126482 0.66 0.904946
Target:  5'- -aAGUGAgaCGGCGCuCGGCGcuGGUGCa -3'
miRNA:   3'- gcUUACUa-GCUGCGcGCCGU--CCACGa -5'
25734 5' -55.8 NC_005337.1 + 99517 0.66 0.904946
Target:  5'- -uGGUGcucugCGACGaCGCGGCccGGUGCg -3'
miRNA:   3'- gcUUACua---GCUGC-GCGCCGu-CCACGa -5'
25734 5' -55.8 NC_005337.1 + 77065 0.66 0.901141
Target:  5'- cCGAGUuuUCGcGgGCGCGGCacccguacgccgaguAGGUGCg -3'
miRNA:   3'- -GCUUAcuAGC-UgCGCGCCG---------------UCCACGa -5'
25734 5' -55.8 NC_005337.1 + 118915 0.66 0.891932
Target:  5'- cCGAGUGcgCGccuggaagcgucGCGCGgGcGCAGcGUGCg -3'
miRNA:   3'- -GCUUACuaGC------------UGCGCgC-CGUC-CACGa -5'
25734 5' -55.8 NC_005337.1 + 100253 0.66 0.885076
Target:  5'- --cGUGGagGGCGC-CGaGCGGGUGCUc -3'
miRNA:   3'- gcuUACUagCUGCGcGC-CGUCCACGA- -5'
25734 5' -55.8 NC_005337.1 + 99408 0.66 0.885076
Target:  5'- ---nUGcgCaccGCGgGCGGCGGGUGCg -3'
miRNA:   3'- gcuuACuaGc--UGCgCGCCGUCCACGa -5'
25734 5' -55.8 NC_005337.1 + 47858 0.66 0.885076
Target:  5'- gCGAGUGcacGUCGG-GCGCGGCGGacGCa -3'
miRNA:   3'- -GCUUAC---UAGCUgCGCGCCGUCcaCGa -5'
25734 5' -55.8 NC_005337.1 + 41035 0.66 0.877992
Target:  5'- gCGucAUGGaccUCGACG-GCGGCAuGUGCUa -3'
miRNA:   3'- -GCu-UACU---AGCUGCgCGCCGUcCACGA- -5'
25734 5' -55.8 NC_005337.1 + 41830 0.67 0.870686
Target:  5'- cCGGcgGUGGUCGAaggagaugagcaCGUGCucgaGCAGGUGCg -3'
miRNA:   3'- -GCU--UACUAGCU------------GCGCGc---CGUCCACGa -5'
25734 5' -55.8 NC_005337.1 + 981 0.67 0.863162
Target:  5'- gCGGGgcugGcgCGGCGCGCGG-AGGgcggGCg -3'
miRNA:   3'- -GCUUa---CuaGCUGCGCGCCgUCCa---CGa -5'
25734 5' -55.8 NC_005337.1 + 108626 0.67 0.863162
Target:  5'- cCGAGguggaGAUCGACGCggccGUGGCGGGcgaccGCg -3'
miRNA:   3'- -GCUUa----CUAGCUGCG----CGCCGUCCa----CGa -5'
25734 5' -55.8 NC_005337.1 + 25344 0.67 0.863162
Target:  5'- aCGAGgucuUCGACGCGCGGaagaaguGGcGCUg -3'
miRNA:   3'- -GCUUacu-AGCUGCGCGCCgu-----CCaCGA- -5'
25734 5' -55.8 NC_005337.1 + 124416 0.67 0.863162
Target:  5'- gCGAgAUGGUCcugggcaACGcCGCGcGCGGGUGCg -3'
miRNA:   3'- -GCU-UACUAGc------UGC-GCGC-CGUCCACGa -5'
25734 5' -55.8 NC_005337.1 + 981 0.67 0.863162
Target:  5'- gCGGGgcugGcgCGGCGCGCGG-AGGgcggGCg -3'
miRNA:   3'- -GCUUa---CuaGCUGCGCGCCgUCCa---CGa -5'
25734 5' -55.8 NC_005337.1 + 56135 0.67 0.839349
Target:  5'- aGcGUGcgCGGCGUGCaGCGGGgcgGCa -3'
miRNA:   3'- gCuUACuaGCUGCGCGcCGUCCa--CGa -5'
25734 5' -55.8 NC_005337.1 + 119324 0.67 0.839349
Target:  5'- uGGAaGA-CGAUGCGCGGCGacGGUGg- -3'
miRNA:   3'- gCUUaCUaGCUGCGCGCCGU--CCACga -5'
25734 5' -55.8 NC_005337.1 + 29533 0.67 0.839349
Target:  5'- ----cGGUCuuCGCGCGGCGGccGUGCa -3'
miRNA:   3'- gcuuaCUAGcuGCGCGCCGUC--CACGa -5'
25734 5' -55.8 NC_005337.1 + 73436 0.67 0.827635
Target:  5'- gGGA-GAUCGugcgccaguucuuCGCGCGGC-GGUGCc -3'
miRNA:   3'- gCUUaCUAGCu------------GCGCGCCGuCCACGa -5'
25734 5' -55.8 NC_005337.1 + 40544 0.68 0.822505
Target:  5'- -------gCGGCGCGCGGU-GGUGCg -3'
miRNA:   3'- gcuuacuaGCUGCGCGCCGuCCACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.