miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25735 3' -53.6 NC_005337.1 + 128610 0.66 0.954507
Target:  5'- gGCGUGauagacgccgacuacCGCGGCaACGuGGgCGUGGUGCu -3'
miRNA:   3'- -UGCAU---------------GCGCUG-UGUcUCgGCACUACG- -5'
25735 3' -53.6 NC_005337.1 + 68493 0.66 0.952892
Target:  5'- gGCGccGCGCuGCugGcGGCCGUGgGUGCg -3'
miRNA:   3'- -UGCa-UGCGcUGugUcUCGGCAC-UACG- -5'
25735 3' -53.6 NC_005337.1 + 87332 0.66 0.952892
Target:  5'- cACGUG-GUGGCugGaGAGCCG-GAUGa -3'
miRNA:   3'- -UGCAUgCGCUGugU-CUCGGCaCUACg -5'
25735 3' -53.6 NC_005337.1 + 77425 0.66 0.952892
Target:  5'- gGCGgugcAUGCG-CACGaAGCCGUgccgGAUGCg -3'
miRNA:   3'- -UGCa---UGCGCuGUGUcUCGGCA----CUACG- -5'
25735 3' -53.6 NC_005337.1 + 100721 0.66 0.952892
Target:  5'- cACGUACGUGAagUACAcGGCUcUGGUGUc -3'
miRNA:   3'- -UGCAUGCGCU--GUGUcUCGGcACUACG- -5'
25735 3' -53.6 NC_005337.1 + 109420 0.66 0.952892
Target:  5'- gGCGUGCGCGAcCACGuccucGAGCaCGcGccGCu -3'
miRNA:   3'- -UGCAUGCGCU-GUGU-----CUCG-GCaCuaCG- -5'
25735 3' -53.6 NC_005337.1 + 64313 0.66 0.952892
Target:  5'- gGCGUcuuGCGCGugcccaccACGCGGAG-CGUGgcGCc -3'
miRNA:   3'- -UGCA---UGCGC--------UGUGUCUCgGCACuaCG- -5'
25735 3' -53.6 NC_005337.1 + 127279 0.66 0.952892
Target:  5'- gACGUcCGCGccauggacaaGCACGGcgucaccccgcuGGCCGUGcUGCu -3'
miRNA:   3'- -UGCAuGCGC----------UGUGUC------------UCGGCACuACG- -5'
25735 3' -53.6 NC_005337.1 + 132284 0.66 0.952892
Target:  5'- uGCGgucguccgACGCGACGCuGGAGCuCGUccGGcUGCu -3'
miRNA:   3'- -UGCa-------UGCGCUGUG-UCUCG-GCA--CU-ACG- -5'
25735 3' -53.6 NC_005337.1 + 23059 0.66 0.952892
Target:  5'- cACGccGCGCGccggaACGCGGcGGCCGUGcccggcaucGUGCg -3'
miRNA:   3'- -UGCa-UGCGC-----UGUGUC-UCGGCAC---------UACG- -5'
25735 3' -53.6 NC_005337.1 + 130178 0.66 0.948688
Target:  5'- cCGUGCGCGcggagcACGCGGAGCUcauccUGGagUGCg -3'
miRNA:   3'- uGCAUGCGC------UGUGUCUCGGc----ACU--ACG- -5'
25735 3' -53.6 NC_005337.1 + 39226 0.66 0.948688
Target:  5'- gGCGUGCGCGACaacgcGCAGGcguuccugcccGCCGUcccGCc -3'
miRNA:   3'- -UGCAUGCGCUG-----UGUCU-----------CGGCAcuaCG- -5'
25735 3' -53.6 NC_005337.1 + 126224 0.66 0.94738
Target:  5'- -aGUGCGUGAuggagcuggcccucCGCAaGGCCGUGGaccUGCu -3'
miRNA:   3'- ugCAUGCGCU--------------GUGUcUCGGCACU---ACG- -5'
25735 3' -53.6 NC_005337.1 + 49734 0.66 0.944242
Target:  5'- aGCGggACGCcgGACACGGugcGCCgGUGcGUGCg -3'
miRNA:   3'- -UGCa-UGCG--CUGUGUCu--CGG-CAC-UACG- -5'
25735 3' -53.6 NC_005337.1 + 73905 0.66 0.944242
Target:  5'- cGCGUACGUGAU-CGGGGUgGUaGAcgGCa -3'
miRNA:   3'- -UGCAUGCGCUGuGUCUCGgCA-CUa-CG- -5'
25735 3' -53.6 NC_005337.1 + 104472 0.66 0.944242
Target:  5'- -aGUACGCGgagcACGCGGAGCaCGcgcaGcgGCg -3'
miRNA:   3'- ugCAUGCGC----UGUGUCUCG-GCa---CuaCG- -5'
25735 3' -53.6 NC_005337.1 + 2208 0.66 0.944242
Target:  5'- cGCGgGCGCGGCcCGG-GCCGcGA-GCg -3'
miRNA:   3'- -UGCaUGCGCUGuGUCuCGGCaCUaCG- -5'
25735 3' -53.6 NC_005337.1 + 65740 0.66 0.944242
Target:  5'- cCGUcacuaGCGCGGCACgcucAGAGCCGagcgcgGgcGCa -3'
miRNA:   3'- uGCA-----UGCGCUGUG----UCUCGGCa-----CuaCG- -5'
25735 3' -53.6 NC_005337.1 + 79607 0.67 0.939552
Target:  5'- -gGUcGCGCGAgCGCAgGAGCCcgcagcgGAUGCa -3'
miRNA:   3'- ugCA-UGCGCU-GUGU-CUCGGca-----CUACG- -5'
25735 3' -53.6 NC_005337.1 + 1435 0.67 0.939552
Target:  5'- uGCGaGCGCGGC--GGcGCCGaGGUGCg -3'
miRNA:   3'- -UGCaUGCGCUGugUCuCGGCaCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.