miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25735 5' -59.6 NC_005337.1 + 36538 0.67 0.683627
Target:  5'- gGGCgUCcccGGCGGCUgggcgGCGcCGGCGAg -3'
miRNA:   3'- gCCGgAG---UUGCCGGa----CGCaGUCGCUg -5'
25735 5' -59.6 NC_005337.1 + 1943 0.67 0.683627
Target:  5'- uCGGUCgugcgCAugucGCuGCCcGCGUCAGCGAg -3'
miRNA:   3'- -GCCGGa----GU----UGcCGGaCGCAGUCGCUg -5'
25735 5' -59.6 NC_005337.1 + 133473 0.67 0.683627
Target:  5'- aCGGCUccgCGGagcUGGUCUGCcucgucGUCGGCGGCg -3'
miRNA:   3'- -GCCGGa--GUU---GCCGGACG------CAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 122515 0.67 0.673612
Target:  5'- cCGGagaCCUCGcuGCuGGCCcugGCG-CGGCGACg -3'
miRNA:   3'- -GCC---GGAGU--UG-CCGGa--CGCaGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 28958 0.67 0.673612
Target:  5'- aCGuGCUgggCAACuggGGCgUGCG-CAGCGACu -3'
miRNA:   3'- -GC-CGGa--GUUG---CCGgACGCaGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 64237 0.67 0.673612
Target:  5'- aGcGCCUCuuuGCGGCgCUGCGgCGGCu-- -3'
miRNA:   3'- gC-CGGAGu--UGCCG-GACGCaGUCGcug -5'
25735 5' -59.6 NC_005337.1 + 10250 0.67 0.673612
Target:  5'- gCGGCCUUcGCGGg--GCGccuccaUCGGCGGCg -3'
miRNA:   3'- -GCCGGAGuUGCCggaCGC------AGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 83937 0.67 0.671605
Target:  5'- uCGGCCgggCGGCGGguaCCggGCGguccgcgcagggCAGCGGCg -3'
miRNA:   3'- -GCCGGa--GUUGCC---GGa-CGCa-----------GUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 77208 0.67 0.663565
Target:  5'- gGGCgCUCGcagaGCGGCCUG-G-CuGCGGCg -3'
miRNA:   3'- gCCG-GAGU----UGCCGGACgCaGuCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 67974 0.67 0.663565
Target:  5'- gCGGCgCUCAcGCGGuCCaGgGUCGGCG-Cg -3'
miRNA:   3'- -GCCG-GAGU-UGCC-GGaCgCAGUCGCuG- -5'
25735 5' -59.6 NC_005337.1 + 89831 0.67 0.663565
Target:  5'- aGGCgCUCGACGuCCUcCGgCGGCGGCu -3'
miRNA:   3'- gCCG-GAGUUGCcGGAcGCaGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 82589 0.67 0.663565
Target:  5'- aGGCCagAcUGGCCUcgccguagGCGUCcaggGGCGACg -3'
miRNA:   3'- gCCGGagUuGCCGGA--------CGCAG----UCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 53765 0.67 0.663565
Target:  5'- gGGCCUCGGCGuGCCcGCcccCGGCcGCg -3'
miRNA:   3'- gCCGGAGUUGC-CGGaCGca-GUCGcUG- -5'
25735 5' -59.6 NC_005337.1 + 25188 0.67 0.663565
Target:  5'- uGGCCUCGgccGCGGCCaUGUucGUCGcGCuGCa -3'
miRNA:   3'- gCCGGAGU---UGCCGG-ACG--CAGU-CGcUG- -5'
25735 5' -59.6 NC_005337.1 + 133166 0.67 0.663565
Target:  5'- gCGGCUgcucccggCGGCGGCgCUGCGcCGGCu-- -3'
miRNA:   3'- -GCCGGa-------GUUGCCG-GACGCaGUCGcug -5'
25735 5' -59.6 NC_005337.1 + 133166 0.67 0.663565
Target:  5'- gCGGCUgcucccggCGGCGGCgCUGCGcCGGCu-- -3'
miRNA:   3'- -GCCGGa-------GUUGCCG-GACGCaGUCGcug -5'
25735 5' -59.6 NC_005337.1 + 47582 0.67 0.653493
Target:  5'- aCGaGCCgCAGCcGCUggGCGUgGGCGACg -3'
miRNA:   3'- -GC-CGGaGUUGcCGGa-CGCAgUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 50393 0.67 0.653493
Target:  5'- uGGCgCgggGGCGcGCCgcGCGUCGGUGACg -3'
miRNA:   3'- gCCG-Gag-UUGC-CGGa-CGCAGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 64893 0.67 0.653493
Target:  5'- -cGCCUCAcagagGCGGaCCUgGCGcUAGCGGCc -3'
miRNA:   3'- gcCGGAGU-----UGCC-GGA-CGCaGUCGCUG- -5'
25735 5' -59.6 NC_005337.1 + 100204 0.67 0.653493
Target:  5'- gCGGCCUgcucuaCGACGGCCgGCG-CcGCGuGCg -3'
miRNA:   3'- -GCCGGA------GUUGCCGGaCGCaGuCGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.