miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25736 3' -57.3 NC_005337.1 + 35411 0.65 0.879601
Target:  5'- gCgGCGCGGuaguacugCUCgauggacgcgcacgGCGCGGUGggCGCGa -3'
miRNA:   3'- -GgUGCGCCua------GAG--------------CGCGUCACa-GCGC- -5'
25736 3' -57.3 NC_005337.1 + 114383 0.66 0.874661
Target:  5'- gCACGCGGA-CUaCGCGCuccuGUGccggUGCa -3'
miRNA:   3'- gGUGCGCCUaGA-GCGCGu---CACa---GCGc -5'
25736 3' -57.3 NC_005337.1 + 106019 0.66 0.874661
Target:  5'- aCCACGCacgug-CGCGUGGUGcCGCGc -3'
miRNA:   3'- -GGUGCGccuagaGCGCGUCACaGCGC- -5'
25736 3' -57.3 NC_005337.1 + 64331 0.66 0.867426
Target:  5'- aCCACGCGGA----GCGUGGcGcCGCGg -3'
miRNA:   3'- -GGUGCGCCUagagCGCGUCaCaGCGC- -5'
25736 3' -57.3 NC_005337.1 + 105063 0.66 0.867426
Target:  5'- gCCGCGCGGcgCU-GCGCAG---CGCc -3'
miRNA:   3'- -GGUGCGCCuaGAgCGCGUCacaGCGc -5'
25736 3' -57.3 NC_005337.1 + 109531 0.66 0.867426
Target:  5'- cCCGCGCGGcgCgaugGCGGUGUagggCGCGu -3'
miRNA:   3'- -GGUGCGCCuaGagcgCGUCACA----GCGC- -5'
25736 3' -57.3 NC_005337.1 + 28260 0.66 0.867426
Target:  5'- aCCACGCGcacg-UGCGUGGUGUcCGUGa -3'
miRNA:   3'- -GGUGCGCcuagaGCGCGUCACA-GCGC- -5'
25736 3' -57.3 NC_005337.1 + 45339 0.66 0.867426
Target:  5'- aCCAgGCGGAUCauggggCGCGaGGUGgUGCu -3'
miRNA:   3'- -GGUgCGCCUAGa-----GCGCgUCACaGCGc -5'
25736 3' -57.3 NC_005337.1 + 42580 0.66 0.867426
Target:  5'- gCCGCGgGGcUCUC-CGUgaaGGcGUCGCGg -3'
miRNA:   3'- -GGUGCgCCuAGAGcGCG---UCaCAGCGC- -5'
25736 3' -57.3 NC_005337.1 + 84803 0.66 0.867426
Target:  5'- uCCACGCaGGAcUUCGaccCGgAGUGcCGCGg -3'
miRNA:   3'- -GGUGCG-CCUaGAGC---GCgUCACaGCGC- -5'
25736 3' -57.3 NC_005337.1 + 61917 0.66 0.867426
Target:  5'- uCCGCGCGa---UCGCGCGGaacuuggcGUUGCGa -3'
miRNA:   3'- -GGUGCGCcuagAGCGCGUCa-------CAGCGC- -5'
25736 3' -57.3 NC_005337.1 + 96117 0.66 0.859986
Target:  5'- aCAUGCGGc---CGCGCAGgaUGcCGCGg -3'
miRNA:   3'- gGUGCGCCuagaGCGCGUC--ACaGCGC- -5'
25736 3' -57.3 NC_005337.1 + 95518 0.66 0.859986
Target:  5'- aCCGCGCaccggCUCGCcaugaccaggucGCAGUG-CGCGg -3'
miRNA:   3'- -GGUGCGccua-GAGCG------------CGUCACaGCGC- -5'
25736 3' -57.3 NC_005337.1 + 96875 0.66 0.859986
Target:  5'- uCCGCGCGGA---UGCGCGGcguggacGUCgGCGa -3'
miRNA:   3'- -GGUGCGCCUagaGCGCGUCa------CAG-CGC- -5'
25736 3' -57.3 NC_005337.1 + 81293 0.66 0.859986
Target:  5'- gCACGCGccuGAUCUCGCGguccagcacuuUAGUGUCcauGCu -3'
miRNA:   3'- gGUGCGC---CUAGAGCGC-----------GUCACAG---CGc -5'
25736 3' -57.3 NC_005337.1 + 110505 0.66 0.859986
Target:  5'- uCgACGUGGcgCUCGCGCguGGUGaacacggCGCc -3'
miRNA:   3'- -GgUGCGCCuaGAGCGCG--UCACa------GCGc -5'
25736 3' -57.3 NC_005337.1 + 59717 0.66 0.859986
Target:  5'- gCCGCGCGGccagcAUCacgcgcCGCGCGGcGgagCGCGu -3'
miRNA:   3'- -GGUGCGCC-----UAGa-----GCGCGUCaCa--GCGC- -5'
25736 3' -57.3 NC_005337.1 + 64076 0.66 0.859986
Target:  5'- uCCuCG-GuGAUCUCGCGCAG-GUUGaCGa -3'
miRNA:   3'- -GGuGCgC-CUAGAGCGCGUCaCAGC-GC- -5'
25736 3' -57.3 NC_005337.1 + 60740 0.66 0.859986
Target:  5'- aCCGCGCGGAUguaCUCGaguGCcGccUCGCGg -3'
miRNA:   3'- -GGUGCGCCUA---GAGCg--CGuCacAGCGC- -5'
25736 3' -57.3 NC_005337.1 + 104446 0.66 0.859986
Target:  5'- aCACGUGGAgcaCGCGCAGcacacacaGUaCGCGg -3'
miRNA:   3'- gGUGCGCCUagaGCGCGUCa-------CA-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.