miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25736 5' -57.9 NC_005337.1 + 30885 0.66 0.81276
Target:  5'- gUCGCGCUgCAGGcgcuccauCUCCGCGUc -3'
miRNA:   3'- gAGCGUGAgGUCCuacuc---GAGGCGCA- -5'
25736 5' -57.9 NC_005337.1 + 45661 0.66 0.809259
Target:  5'- uCUCGCgguacaGCUCCGGGAaguauaucucgaccaUGGuCUCCGUGa -3'
miRNA:   3'- -GAGCG------UGAGGUCCU---------------ACUcGAGGCGCa -5'
25736 5' -57.9 NC_005337.1 + 75266 0.66 0.805732
Target:  5'- -gCGCacccACUCCAGc--GAGCUCCGCu- -3'
miRNA:   3'- gaGCG----UGAGGUCcuaCUCGAGGCGca -5'
25736 5' -57.9 NC_005337.1 + 95061 0.66 0.805732
Target:  5'- gUCGCGCacgcCCGGGuccGGgUCCGCGUa -3'
miRNA:   3'- gAGCGUGa---GGUCCuacUCgAGGCGCA- -5'
25736 5' -57.9 NC_005337.1 + 103564 0.66 0.805732
Target:  5'- -cUGCGacUUCCcGGcgGAGUUCCGCGa -3'
miRNA:   3'- gaGCGU--GAGGuCCuaCUCGAGGCGCa -5'
25736 5' -57.9 NC_005337.1 + 97117 0.66 0.796806
Target:  5'- gUgGCGCUCgGcgguGGcgGAGCUgCGCGUg -3'
miRNA:   3'- gAgCGUGAGgU----CCuaCUCGAgGCGCA- -5'
25736 5' -57.9 NC_005337.1 + 5521 0.66 0.787732
Target:  5'- uUCGCGCgCC-GGcgGAGCUCUGUc- -3'
miRNA:   3'- gAGCGUGaGGuCCuaCUCGAGGCGca -5'
25736 5' -57.9 NC_005337.1 + 78496 0.66 0.787732
Target:  5'- gUCGCGCUCCcGGAacaggGAGUacgCCGCc- -3'
miRNA:   3'- gAGCGUGAGGuCCUa----CUCGa--GGCGca -5'
25736 5' -57.9 NC_005337.1 + 78300 0.66 0.786816
Target:  5'- -cCGUACUCCAGGcUGgggagguGGC-CCGCGc -3'
miRNA:   3'- gaGCGUGAGGUCCuAC-------UCGaGGCGCa -5'
25736 5' -57.9 NC_005337.1 + 103897 0.66 0.778518
Target:  5'- -cCGCGCgcgaCAuGGAcGuGCUCCGCGUg -3'
miRNA:   3'- gaGCGUGag--GU-CCUaCuCGAGGCGCA- -5'
25736 5' -57.9 NC_005337.1 + 87732 0.67 0.769173
Target:  5'- cCUCGaACUUCAGGAuggagucgcUGGGCUCCuCGa -3'
miRNA:   3'- -GAGCgUGAGGUCCU---------ACUCGAGGcGCa -5'
25736 5' -57.9 NC_005337.1 + 95695 0.67 0.759706
Target:  5'- -gCGCugUCgGGGAUGuAG-UCCGCGc -3'
miRNA:   3'- gaGCGugAGgUCCUAC-UCgAGGCGCa -5'
25736 5' -57.9 NC_005337.1 + 112266 0.67 0.759706
Target:  5'- -aCGaGCUCCAugucccGGAUGGGCUCCcCGUc -3'
miRNA:   3'- gaGCgUGAGGU------CCUACUCGAGGcGCA- -5'
25736 5' -57.9 NC_005337.1 + 45963 0.67 0.758753
Target:  5'- -gCGCACgggcauuUCCAGGAgccGCUCCGCc- -3'
miRNA:   3'- gaGCGUG-------AGGUCCUacuCGAGGCGca -5'
25736 5' -57.9 NC_005337.1 + 123615 0.67 0.751089
Target:  5'- -cCGCGCUCgCGGGugcugacgcucgugGAGCUCUGCa- -3'
miRNA:   3'- gaGCGUGAG-GUCCua------------CUCGAGGCGca -5'
25736 5' -57.9 NC_005337.1 + 91773 0.67 0.750126
Target:  5'- -cCGU-CUCCGGGAgcAGUUCCGCGc -3'
miRNA:   3'- gaGCGuGAGGUCCUacUCGAGGCGCa -5'
25736 5' -57.9 NC_005337.1 + 16056 0.67 0.750126
Target:  5'- -gCGCACUgCAuGAUGAcgucgggcgGCUCCGCGc -3'
miRNA:   3'- gaGCGUGAgGUcCUACU---------CGAGGCGCa -5'
25736 5' -57.9 NC_005337.1 + 59673 0.67 0.747231
Target:  5'- gUCGCgGCUCCGGGAgGcgccgaugcgcgacAGCgcgUCCGCGUg -3'
miRNA:   3'- gAGCG-UGAGGUCCUaC--------------UCG---AGGCGCA- -5'
25736 5' -57.9 NC_005337.1 + 79590 0.67 0.740443
Target:  5'- gUCGCcgaGCUUCAGcgugcugaaGGUGcGCUCCGCGUc -3'
miRNA:   3'- gAGCG---UGAGGUC---------CUACuCGAGGCGCA- -5'
25736 5' -57.9 NC_005337.1 + 25520 0.67 0.740443
Target:  5'- -aCGCGCUCCAGGc--AGCggcccacgcgCCGCGa -3'
miRNA:   3'- gaGCGUGAGGUCCuacUCGa---------GGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.