miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25737 3' -57 NC_005337.1 + 13835 0.66 0.870898
Target:  5'- aCCAuguGGg--GCGCGcAGUCCgccGCCUGCc -3'
miRNA:   3'- -GGU---CCagaCGCGCuUCAGG---UGGACGc -5'
25737 3' -57 NC_005337.1 + 77128 0.66 0.870898
Target:  5'- gCCGGGUgCUGCGCuccacGgcGUCCagGCUgGCGg -3'
miRNA:   3'- -GGUCCA-GACGCG-----CuuCAGG--UGGaCGC- -5'
25737 3' -57 NC_005337.1 + 113106 0.66 0.86647
Target:  5'- gCAGGUCcGCGCGAcgaacggcgucgagcAGgaCGCgCUGCGg -3'
miRNA:   3'- gGUCCAGaCGCGCU---------------UCagGUG-GACGC- -5'
25737 3' -57 NC_005337.1 + 7916 0.66 0.863476
Target:  5'- aCgAGGaUCUGCaC-AAGcgCCACCUGCGg -3'
miRNA:   3'- -GgUCC-AGACGcGcUUCa-GGUGGACGC- -5'
25737 3' -57 NC_005337.1 + 69114 0.66 0.863476
Target:  5'- aCCucGUCUGCggGCGAgccgcGGUCCACg-GCGg -3'
miRNA:   3'- -GGucCAGACG--CGCU-----UCAGGUGgaCGC- -5'
25737 3' -57 NC_005337.1 + 124017 0.66 0.863476
Target:  5'- uCCGGGagCUGCugauGUGGcuGG-CCACCUGCa -3'
miRNA:   3'- -GGUCCa-GACG----CGCU--UCaGGUGGACGc -5'
25737 3' -57 NC_005337.1 + 130228 0.66 0.855849
Target:  5'- gCCAGa-CUGCGCGAGaUCCGCgUGgGc -3'
miRNA:   3'- -GGUCcaGACGCGCUUcAGGUGgACgC- -5'
25737 3' -57 NC_005337.1 + 47928 0.66 0.855849
Target:  5'- cCCGGGUCguUGCGGAGgaggCCgGCCUGaCGc -3'
miRNA:   3'- -GGUCCAGacGCGCUUCa---GG-UGGAC-GC- -5'
25737 3' -57 NC_005337.1 + 83688 0.66 0.855849
Target:  5'- aUCGcGGUCUGgGUGgcGUucuUCGCCUGCu -3'
miRNA:   3'- -GGU-CCAGACgCGCuuCA---GGUGGACGc -5'
25737 3' -57 NC_005337.1 + 67989 0.66 0.855849
Target:  5'- uCCAgGGUCgGCGCGugcgCCACCagGCu -3'
miRNA:   3'- -GGU-CCAGaCGCGCuucaGGUGGa-CGc -5'
25737 3' -57 NC_005337.1 + 30247 0.66 0.855849
Target:  5'- gCGGGUCaggcgcagGCGCGGgcaggcGGUCCACg-GCGc -3'
miRNA:   3'- gGUCCAGa-------CGCGCU------UCAGGUGgaCGC- -5'
25737 3' -57 NC_005337.1 + 3580 0.66 0.84802
Target:  5'- uCCGGGcccgUCaGCGCGGacgagcggcAGUCCGCCcacucGCGg -3'
miRNA:   3'- -GGUCC----AGaCGCGCU---------UCAGGUGGa----CGC- -5'
25737 3' -57 NC_005337.1 + 64310 0.66 0.839998
Target:  5'- uCCGGcGUCuUGCGCGu-GcCCACCacGCGg -3'
miRNA:   3'- -GGUC-CAG-ACGCGCuuCaGGUGGa-CGC- -5'
25737 3' -57 NC_005337.1 + 47991 0.66 0.839998
Target:  5'- uCCAGGccgcaCUGCGUGGccuGGaUCCGCgcgCUGCGg -3'
miRNA:   3'- -GGUCCa----GACGCGCU---UC-AGGUG---GACGC- -5'
25737 3' -57 NC_005337.1 + 83112 0.66 0.837555
Target:  5'- gCCAGGUUggaccccaccuccuUGUaCGAcgAGUUCGCCUGCu -3'
miRNA:   3'- -GGUCCAG--------------ACGcGCU--UCAGGUGGACGc -5'
25737 3' -57 NC_005337.1 + 49011 0.67 0.831789
Target:  5'- aCCGGGagCUGCGUccgguGAAGUUCGCCaccgccgugUGCa -3'
miRNA:   3'- -GGUCCa-GACGCG-----CUUCAGGUGG---------ACGc -5'
25737 3' -57 NC_005337.1 + 1583 0.67 0.831789
Target:  5'- cCCAGGUUgUGCGCGAcgauguuGUCCAgggGCGu -3'
miRNA:   3'- -GGUCCAG-ACGCGCUu------CAGGUggaCGC- -5'
25737 3' -57 NC_005337.1 + 6261 0.67 0.831789
Target:  5'- aCucGUCUGCGCGGAgcacGUCCAgCaGCGu -3'
miRNA:   3'- gGucCAGACGCGCUU----CAGGUgGaCGC- -5'
25737 3' -57 NC_005337.1 + 36568 0.67 0.814839
Target:  5'- aCCAGGUCcGCaccuaGCc-GGUCCGCCaGCGc -3'
miRNA:   3'- -GGUCCAGaCG-----CGcuUCAGGUGGaCGC- -5'
25737 3' -57 NC_005337.1 + 17158 0.67 0.814839
Target:  5'- aCCAGGUCgaaGaUGCG--GUCCGUCUGCGa -3'
miRNA:   3'- -GGUCCAGa--C-GCGCuuCAGGUGGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.