miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25737 5' -56.1 NC_005337.1 + 40226 0.66 0.889664
Target:  5'- cAGCGCGG--AGAagUCGUCGgCCGcGCc -3'
miRNA:   3'- -UCGCGUCcaUCUagAGCAGC-GGCuCG- -5'
25737 5' -56.1 NC_005337.1 + 7834 0.66 0.868257
Target:  5'- cAGCGCGcGGUGGuacacgCgcacgcgcgccgUCGcgCGCCGGGCg -3'
miRNA:   3'- -UCGCGU-CCAUCua----G------------AGCa-GCGGCUCG- -5'
25737 5' -56.1 NC_005337.1 + 36594 0.66 0.867509
Target:  5'- cAGCGCGGcGUgcAGAUCcaccaugUgGUUGCgGAGCu -3'
miRNA:   3'- -UCGCGUC-CA--UCUAG-------AgCAGCGgCUCG- -5'
25737 5' -56.1 NC_005337.1 + 96885 0.66 0.889664
Target:  5'- uGCGCGGcGUGGA---CGUCGgCGAGa -3'
miRNA:   3'- uCGCGUC-CAUCUagaGCAGCgGCUCg -5'
25737 5' -56.1 NC_005337.1 + 89988 0.66 0.896348
Target:  5'- cGGCGCc-GUAaAUgccCUCGUCGCCGcGCg -3'
miRNA:   3'- -UCGCGucCAUcUA---GAGCAGCGGCuCG- -5'
25737 5' -56.1 NC_005337.1 + 52614 0.66 0.868257
Target:  5'- gAGCuCGGGgucucgcugaagUGGAUcCUCGUCGaCGGGCg -3'
miRNA:   3'- -UCGcGUCC------------AUCUA-GAGCAGCgGCUCG- -5'
25737 5' -56.1 NC_005337.1 + 62654 0.66 0.868257
Target:  5'- aAGaGCAGGcGGAUgUCGUCGuCCGugaucGCg -3'
miRNA:   3'- -UCgCGUCCaUCUAgAGCAGC-GGCu----CG- -5'
25737 5' -56.1 NC_005337.1 + 101483 0.66 0.874888
Target:  5'- aGGCGCAGGcgcugCUCG-CGCucaugcgCGAGCg -3'
miRNA:   3'- -UCGCGUCCaucuaGAGCaGCG-------GCUCG- -5'
25737 5' -56.1 NC_005337.1 + 25698 0.66 0.875614
Target:  5'- cGCGCAGGagcGGGUUgucCGgccgCGCCGccAGCg -3'
miRNA:   3'- uCGCGUCCa--UCUAGa--GCa---GCGGC--UCG- -5'
25737 5' -56.1 NC_005337.1 + 11627 0.66 0.889664
Target:  5'- cAGCGUGcGGUAGAagcccaggaacuUCUCGggcgCGuCCGAGa -3'
miRNA:   3'- -UCGCGU-CCAUCU------------AGAGCa---GC-GGCUCg -5'
25737 5' -56.1 NC_005337.1 + 32510 0.66 0.892365
Target:  5'- cGUGCAGGUugugcaccuccaggaGGAcCUCGUgGCUcAGCu -3'
miRNA:   3'- uCGCGUCCA---------------UCUaGAGCAgCGGcUCG- -5'
25737 5' -56.1 NC_005337.1 + 60204 0.66 0.889664
Target:  5'- cGGCGCGGGgggGGAcggCUUGggCGCgGGGg -3'
miRNA:   3'- -UCGCGUCCa--UCUa--GAGCa-GCGgCUCg -5'
25737 5' -56.1 NC_005337.1 + 21768 0.66 0.882751
Target:  5'- cAGCGCugcgAGGUCuUCGaCGCCGuGCu -3'
miRNA:   3'- -UCGCGuccaUCUAG-AGCaGCGGCuCG- -5'
25737 5' -56.1 NC_005337.1 + 108843 0.66 0.875614
Target:  5'- aAGCGCGcGGgcGAcacgC-CGUCGUgCGAGCg -3'
miRNA:   3'- -UCGCGU-CCauCUa---GaGCAGCG-GCUCG- -5'
25737 5' -56.1 NC_005337.1 + 74242 0.66 0.868257
Target:  5'- gAGgGCGGGUcgccgcgcGGGUCUCcgcgCGCCGAa- -3'
miRNA:   3'- -UCgCGUCCA--------UCUAGAGca--GCGGCUcg -5'
25737 5' -56.1 NC_005337.1 + 35737 0.66 0.868257
Target:  5'- cGGCGU-GGUGG-UgUCGUacgCGCUGGGCg -3'
miRNA:   3'- -UCGCGuCCAUCuAgAGCA---GCGGCUCG- -5'
25737 5' -56.1 NC_005337.1 + 2443 0.66 0.889664
Target:  5'- uAGUGCAGGUacgugugcAGcgCcgUGUUGCCGaAGCc -3'
miRNA:   3'- -UCGCGUCCA--------UCuaGa-GCAGCGGC-UCG- -5'
25737 5' -56.1 NC_005337.1 + 115273 0.66 0.889664
Target:  5'- cGCGCucuGGc-GAaCgCGUCGUCGAGCa -3'
miRNA:   3'- uCGCGu--CCauCUaGaGCAGCGGCUCG- -5'
25737 5' -56.1 NC_005337.1 + 12610 0.66 0.868257
Target:  5'- cGGaugaGCAGGUccacgaccucggGGGUCgccgCGUCGUCGAuGCc -3'
miRNA:   3'- -UCg---CGUCCA------------UCUAGa---GCAGCGGCU-CG- -5'
25737 5' -56.1 NC_005337.1 + 48365 0.66 0.889664
Target:  5'- cGCGguGGUGGA-CgagaaCGUCaGCCGcGCc -3'
miRNA:   3'- uCGCguCCAUCUaGa----GCAG-CGGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.