miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25738 3' -56.9 NC_005337.1 + 99163 0.66 0.875712
Target:  5'- uGGGCGuccgcGCCGCGCGGAcGAUgcgcgUCGAGa -3'
miRNA:   3'- -UCUGCu----CGGCGUGCUUcCUGa----GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 2986 0.66 0.875712
Target:  5'- cGACGAacgcGCCuGCgacugGCGGAcGGGCUCCGGc -3'
miRNA:   3'- uCUGCU----CGG-CG-----UGCUU-CCUGAGGCUc -5'
25738 3' -56.9 NC_005337.1 + 38282 0.66 0.875712
Target:  5'- uAGGCGcuCCaaAUGggGGACUCCGuGu -3'
miRNA:   3'- -UCUGCucGGcgUGCuuCCUGAGGCuC- -5'
25738 3' -56.9 NC_005337.1 + 11389 0.66 0.875712
Target:  5'- cGGCGGGCUGaUGCGccAGGGCcCCGGGu -3'
miRNA:   3'- uCUGCUCGGC-GUGCu-UCCUGaGGCUC- -5'
25738 3' -56.9 NC_005337.1 + 91879 0.66 0.875712
Target:  5'- -aGCGAgGCCGCGCGccgcGGcgcCUCCGGGu -3'
miRNA:   3'- ucUGCU-CGGCGUGCuu--CCu--GAGGCUC- -5'
25738 3' -56.9 NC_005337.1 + 265 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 143 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 204 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 326 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 122911 0.66 0.86842
Target:  5'- uGGCGAGCgCGCuCGAGGGcGCgaugCUGAa -3'
miRNA:   3'- uCUGCUCG-GCGuGCUUCC-UGa---GGCUc -5'
25738 3' -56.9 NC_005337.1 + 82 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 29 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 387 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 82 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 40551 0.66 0.86842
Target:  5'- cGGCGGGUCGCugGA-GGcCgcgUCGAGc -3'
miRNA:   3'- uCUGCUCGGCGugCUuCCuGa--GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 29 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 265 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 143 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 326 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 204 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.