miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25738 3' -56.9 NC_005337.1 + 40551 0.66 0.86842
Target:  5'- cGGCGGGUCGCugGA-GGcCgcgUCGAGc -3'
miRNA:   3'- uCUGCUCGGCGugCUuCCuGa--GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 9441 0.66 0.86842
Target:  5'- -uACGAGCCGCAUGAaguugAGGaACUggaaCCGGc -3'
miRNA:   3'- ucUGCUCGGCGUGCU-----UCC-UGA----GGCUc -5'
25738 3' -56.9 NC_005337.1 + 204 0.66 0.86842
Target:  5'- cGGACGcacGGaCGCACGGAcGGGCUgacUCGAGa -3'
miRNA:   3'- -UCUGC---UCgGCGUGCUU-CCUGA---GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 114731 0.66 0.86842
Target:  5'- cGACGuccGGCgcgUGCugGAcGGGCUCCGGc -3'
miRNA:   3'- uCUGC---UCG---GCGugCUuCCUGAGGCUc -5'
25738 3' -56.9 NC_005337.1 + 45032 0.66 0.860918
Target:  5'- cGugGAcuGCCGCACGAu--GCUCCGc- -3'
miRNA:   3'- uCugCU--CGGCGUGCUuccUGAGGCuc -5'
25738 3' -56.9 NC_005337.1 + 19410 0.66 0.860918
Target:  5'- cGGCGcacagcaccGGCUGguUGAGGGACUUCGuGa -3'
miRNA:   3'- uCUGC---------UCGGCguGCUUCCUGAGGCuC- -5'
25738 3' -56.9 NC_005337.1 + 110443 0.66 0.860918
Target:  5'- cGACGAa-CGCGgGcAGGAcCUCCGAGg -3'
miRNA:   3'- uCUGCUcgGCGUgCuUCCU-GAGGCUC- -5'
25738 3' -56.9 NC_005337.1 + 80514 0.66 0.860918
Target:  5'- gGGGCGGGCaCGC-CGAggcccGGGGCgCgGAGa -3'
miRNA:   3'- -UCUGCUCG-GCGuGCU-----UCCUGaGgCUC- -5'
25738 3' -56.9 NC_005337.1 + 76962 0.66 0.860918
Target:  5'- cGGCGcuuGGCCGCGCGG----UUCCGAGa -3'
miRNA:   3'- uCUGC---UCGGCGUGCUuccuGAGGCUC- -5'
25738 3' -56.9 NC_005337.1 + 105004 0.66 0.860156
Target:  5'- aGGugGAGUucgagaaGCAgGAccccugcuucuacGGGACUCCGAa -3'
miRNA:   3'- -UCugCUCGg------CGUgCU-------------UCCUGAGGCUc -5'
25738 3' -56.9 NC_005337.1 + 33819 0.66 0.853211
Target:  5'- gAGAUGAGuCCGuCGCGAAGGg--CCGuGu -3'
miRNA:   3'- -UCUGCUC-GGC-GUGCUUCCugaGGCuC- -5'
25738 3' -56.9 NC_005337.1 + 9329 0.66 0.853211
Target:  5'- cAGcCGAGCUGCGuccgGAGGGACUgcugUCGGGg -3'
miRNA:   3'- -UCuGCUCGGCGUg---CUUCCUGA----GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 41142 0.66 0.853211
Target:  5'- cGGCGAGaCGCGCGuccGGGACcgucUCCaGGGg -3'
miRNA:   3'- uCUGCUCgGCGUGCu--UCCUG----AGG-CUC- -5'
25738 3' -56.9 NC_005337.1 + 111843 0.66 0.845305
Target:  5'- uAGAUGAGCUGCAgGAgcAGGcC-CCGGa -3'
miRNA:   3'- -UCUGCUCGGCGUgCU--UCCuGaGGCUc -5'
25738 3' -56.9 NC_005337.1 + 13894 0.66 0.845305
Target:  5'- -cACGuGCCGCACGAgccggcAGGcGCgCCGGGu -3'
miRNA:   3'- ucUGCuCGGCGUGCU------UCC-UGaGGCUC- -5'
25738 3' -56.9 NC_005337.1 + 47580 0.66 0.845305
Target:  5'- cGACGAGCCGCAgcCGcuGGGCg-UGGGc -3'
miRNA:   3'- uCUGCUCGGCGU--GCuuCCUGagGCUC- -5'
25738 3' -56.9 NC_005337.1 + 52739 0.66 0.845305
Target:  5'- cGcCGAGCugaagCGCGCGAAGGuggugcucauCUCCGAu -3'
miRNA:   3'- uCuGCUCG-----GCGUGCUUCCu---------GAGGCUc -5'
25738 3' -56.9 NC_005337.1 + 65397 0.66 0.837207
Target:  5'- uGGCcAGCUGCGCGAAGauguuCUCCGGc -3'
miRNA:   3'- uCUGcUCGGCGUGCUUCcu---GAGGCUc -5'
25738 3' -56.9 NC_005337.1 + 87719 0.66 0.837207
Target:  5'- uGGAUGAGCCGCuccuCGAacuucAGGAUggagucgCUGGGc -3'
miRNA:   3'- -UCUGCUCGGCGu---GCU-----UCCUGa------GGCUC- -5'
25738 3' -56.9 NC_005337.1 + 90577 0.66 0.837207
Target:  5'- cGGACGAGCU-CACGu-GGAC-CCGGa -3'
miRNA:   3'- -UCUGCUCGGcGUGCuuCCUGaGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.