miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25738 5' -58.4 NC_005337.1 + 22624 0.66 0.750926
Target:  5'- -cUUCGAGCCGGCGCGGauccgcgaGGCcuucGGCg- -3'
miRNA:   3'- cuGAGCUUGGUCGCGUCg-------UCG----CCGaa -5'
25738 5' -58.4 NC_005337.1 + 15237 0.66 0.750926
Target:  5'- --gUCGAACCGGUccugGCGGCGcCGGCg- -3'
miRNA:   3'- cugAGCUUGGUCG----CGUCGUcGCCGaa -5'
25738 5' -58.4 NC_005337.1 + 115476 0.66 0.750926
Target:  5'- uACUCGcACCGGUGCAcGCAcGgGGCc- -3'
miRNA:   3'- cUGAGCuUGGUCGCGU-CGU-CgCCGaa -5'
25738 5' -58.4 NC_005337.1 + 64901 0.66 0.741098
Target:  5'- aGAggCGGACCuGGCGCuAGCGGcCGGCc- -3'
miRNA:   3'- -CUgaGCUUGG-UCGCG-UCGUC-GCCGaa -5'
25738 5' -58.4 NC_005337.1 + 84064 0.66 0.741098
Target:  5'- -cCUCGGGgaGGCGCAG-GGCGGCg- -3'
miRNA:   3'- cuGAGCUUggUCGCGUCgUCGCCGaa -5'
25738 5' -58.4 NC_005337.1 + 95527 0.66 0.741098
Target:  5'- cGGCUCGccauGACCAGguCGCAGUGcGCGGuCUUg -3'
miRNA:   3'- -CUGAGC----UUGGUC--GCGUCGU-CGCC-GAA- -5'
25738 5' -58.4 NC_005337.1 + 115615 0.66 0.741098
Target:  5'- -cCUCGGauccGCCcGC-CGGCGGCGGCg- -3'
miRNA:   3'- cuGAGCU----UGGuCGcGUCGUCGCCGaa -5'
25738 5' -58.4 NC_005337.1 + 31897 0.66 0.741098
Target:  5'- cGCUCuccACCAGCGCGGUGGCcaGGUg- -3'
miRNA:   3'- cUGAGcu-UGGUCGCGUCGUCG--CCGaa -5'
25738 5' -58.4 NC_005337.1 + 25156 0.66 0.731173
Target:  5'- cGACUUGAAgUucuuGUGguGCAcGCGGCUg -3'
miRNA:   3'- -CUGAGCUUgGu---CGCguCGU-CGCCGAa -5'
25738 5' -58.4 NC_005337.1 + 9920 0.66 0.731173
Target:  5'- aGAUgCGGGCCAGCGCGGCcugauGCGaucGCg- -3'
miRNA:   3'- -CUGaGCUUGGUCGCGUCGu----CGC---CGaa -5'
25738 5' -58.4 NC_005337.1 + 20716 0.66 0.731173
Target:  5'- gGACUCGAG-CAGCuuguaCAGaCAGCGGUUg -3'
miRNA:   3'- -CUGAGCUUgGUCGc----GUC-GUCGCCGAa -5'
25738 5' -58.4 NC_005337.1 + 25099 0.66 0.731173
Target:  5'- aGCUCc-GCCcGCGCGGC-GCGGCg- -3'
miRNA:   3'- cUGAGcuUGGuCGCGUCGuCGCCGaa -5'
25738 5' -58.4 NC_005337.1 + 67453 0.66 0.731173
Target:  5'- aGACggUGAuCCGGCGCAGCcGCcGCUUc -3'
miRNA:   3'- -CUGa-GCUuGGUCGCGUCGuCGcCGAA- -5'
25738 5' -58.4 NC_005337.1 + 11594 0.66 0.725174
Target:  5'- gGAgUCGAugCGGUGCAGCaccagguccucguccAGCGuGCg- -3'
miRNA:   3'- -CUgAGCUugGUCGCGUCG---------------UCGC-CGaa -5'
25738 5' -58.4 NC_005337.1 + 2090 0.66 0.724172
Target:  5'- cGCUCGAcgccagcGCCAGCGCcuccgucgcguccguGugGCAGCGGUUc -3'
miRNA:   3'- cUGAGCU-------UGGUCGCG---------------U--CGUCGCCGAa -5'
25738 5' -58.4 NC_005337.1 + 112339 0.66 0.721159
Target:  5'- uGACcuccgCGAGCuCGGCGgAGCGcGCGGCc- -3'
miRNA:   3'- -CUGa----GCUUG-GUCGCgUCGU-CGCCGaa -5'
25738 5' -58.4 NC_005337.1 + 67766 0.66 0.711066
Target:  5'- -uCUCG-GCCGGCu--GCAGCGGCUc -3'
miRNA:   3'- cuGAGCuUGGUCGcguCGUCGCCGAa -5'
25738 5' -58.4 NC_005337.1 + 10664 0.66 0.711066
Target:  5'- gGACcgCGcGCCGGC-CGGCGGCGGgUUc -3'
miRNA:   3'- -CUGa-GCuUGGUCGcGUCGUCGCCgAA- -5'
25738 5' -58.4 NC_005337.1 + 121492 0.66 0.711066
Target:  5'- uGAUcgUGGGCCucgucauCGCGGCAGCGGCg- -3'
miRNA:   3'- -CUGa-GCUUGGuc-----GCGUCGUCGCCGaa -5'
25738 5' -58.4 NC_005337.1 + 65516 0.66 0.711066
Target:  5'- uACUCGAugCGGUGCGGcCGGUgcuggaGGCg- -3'
miRNA:   3'- cUGAGCUugGUCGCGUC-GUCG------CCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.