miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25739 3' -53.4 NC_005337.1 + 78083 0.66 0.962146
Target:  5'- cUUGcgGUagAGCUuguucCGCGCGCuGAGGUCc -3'
miRNA:   3'- -AGCuaCAa-UCGGu----GCGCGCG-CUUCAG- -5'
25739 3' -53.4 NC_005337.1 + 41656 0.66 0.962146
Target:  5'- aUCGGgauc-GCUgagACGCGCGCGAacgcGGUCu -3'
miRNA:   3'- -AGCUacaauCGG---UGCGCGCGCU----UCAG- -5'
25739 3' -53.4 NC_005337.1 + 65333 0.66 0.962146
Target:  5'- cCGGUGcc-GCCGCGCGgGUacGGGUCg -3'
miRNA:   3'- aGCUACaauCGGUGCGCgCGc-UUCAG- -5'
25739 3' -53.4 NC_005337.1 + 101004 0.66 0.962146
Target:  5'- cUCGAUcu---CCACGCGCGgGAAGa- -3'
miRNA:   3'- -AGCUAcaaucGGUGCGCGCgCUUCag -5'
25739 3' -53.4 NC_005337.1 + 21600 0.66 0.962146
Target:  5'- aUCGAccgcaaccUGgacuUCAUGCGCGCGGAGUUc -3'
miRNA:   3'- -AGCU--------ACaaucGGUGCGCGCGCUUCAG- -5'
25739 3' -53.4 NC_005337.1 + 29717 0.66 0.962146
Target:  5'- gCGAggcgcGCaCGCGCGCGCGguGUUg -3'
miRNA:   3'- aGCUacaauCG-GUGCGCGCGCuuCAG- -5'
25739 3' -53.4 NC_005337.1 + 36997 0.66 0.962146
Target:  5'- cCGcgGUcuccAGCCGCGgGgaCGUGggGUCg -3'
miRNA:   3'- aGCuaCAa---UCGGUGCgC--GCGCuuCAG- -5'
25739 3' -53.4 NC_005337.1 + 109741 0.66 0.962146
Target:  5'- gUCGGcgGUgcGCagCACGUcCGCGAGGUCg -3'
miRNA:   3'- -AGCUa-CAauCG--GUGCGcGCGCUUCAG- -5'
25739 3' -53.4 NC_005337.1 + 44268 0.66 0.962146
Target:  5'- aUCGAcc---GCUACGCGCGCGgcGa- -3'
miRNA:   3'- -AGCUacaauCGGUGCGCGCGCuuCag -5'
25739 3' -53.4 NC_005337.1 + 15706 0.66 0.961433
Target:  5'- aCGAcGU--GCCGgacgucgugcgaGCGCGCGAGGUCc -3'
miRNA:   3'- aGCUaCAauCGGUg-----------CGCGCGCUUCAG- -5'
25739 3' -53.4 NC_005337.1 + 127033 0.66 0.958487
Target:  5'- aCcAUGcUGGCgGCGgGCGCGGAGg- -3'
miRNA:   3'- aGcUACaAUCGgUGCgCGCGCUUCag -5'
25739 3' -53.4 NC_005337.1 + 74919 0.66 0.958487
Target:  5'- gCGGcUGgcGGCCuuCGCGCGCGcGGcCg -3'
miRNA:   3'- aGCU-ACaaUCGGu-GCGCGCGCuUCaG- -5'
25739 3' -53.4 NC_005337.1 + 131359 0.66 0.958487
Target:  5'- uUCGAgcacgAGaaGCGCGCGCGGuacGUCu -3'
miRNA:   3'- -AGCUacaa-UCggUGCGCGCGCUu--CAG- -5'
25739 3' -53.4 NC_005337.1 + 69478 0.66 0.954594
Target:  5'- cCGgcGUcguGCCGC-CGCGCGGAGg- -3'
miRNA:   3'- aGCuaCAau-CGGUGcGCGCGCUUCag -5'
25739 3' -53.4 NC_005337.1 + 38300 0.66 0.954594
Target:  5'- cCGGUGgagGGgCGCGCGCGuCGAGc-- -3'
miRNA:   3'- aGCUACaa-UCgGUGCGCGC-GCUUcag -5'
25739 3' -53.4 NC_005337.1 + 18589 0.66 0.954594
Target:  5'- aCGgcGUUGuCCGacuugUGCGCGCGGAGUa -3'
miRNA:   3'- aGCuaCAAUcGGU-----GCGCGCGCUUCAg -5'
25739 3' -53.4 NC_005337.1 + 31909 0.66 0.954594
Target:  5'- gCGcgG-UGGCCAgGUGCGCGGccUCg -3'
miRNA:   3'- aGCuaCaAUCGGUgCGCGCGCUucAG- -5'
25739 3' -53.4 NC_005337.1 + 88979 0.66 0.95046
Target:  5'- cCGGUGUgcGaCCugGCGCG-GGAGa- -3'
miRNA:   3'- aGCUACAauC-GGugCGCGCgCUUCag -5'
25739 3' -53.4 NC_005337.1 + 90904 0.66 0.95046
Target:  5'- cCGggGguagaAGCaCACGCGCaGCGgcGUCu -3'
miRNA:   3'- aGCuaCaa---UCG-GUGCGCG-CGCuuCAG- -5'
25739 3' -53.4 NC_005337.1 + 35050 0.66 0.95046
Target:  5'- cCGAcacgGGCUuuAUGCGCGCGAAGa- -3'
miRNA:   3'- aGCUacaaUCGG--UGCGCGCGCUUCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.