miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25739 5' -63.5 NC_005337.1 + 96840 0.65 0.573826
Target:  5'- gCAGcCGCGGCGUG-GCGuucccccGGCUCCgCGa -3'
miRNA:   3'- aGUC-GCGCCGCGCgUGC-------CCGAGGaGC- -5'
25739 5' -63.5 NC_005337.1 + 94793 0.66 0.568986
Target:  5'- gCAGCGCGcGCGCGuCGCcGGCacggaggcgucguacUCCaUCGu -3'
miRNA:   3'- aGUCGCGC-CGCGC-GUGcCCG---------------AGG-AGC- -5'
25739 5' -63.5 NC_005337.1 + 130206 0.66 0.565122
Target:  5'- -gGGCGCGGaCGUcaacuaCACGGGCcCgCUCGa -3'
miRNA:   3'- agUCGCGCC-GCGc-----GUGCCCGaG-GAGC- -5'
25739 5' -63.5 NC_005337.1 + 108544 0.66 0.565122
Target:  5'- aCGGUGCGGgGCGCGCGccugacgcuggcGGCgcggCCg-- -3'
miRNA:   3'- aGUCGCGCCgCGCGUGC------------CCGa---GGagc -5'
25739 5' -63.5 NC_005337.1 + 65746 0.66 0.565122
Target:  5'- cUAGCGCGGCacGCucagagccgaGCGCGGGCgcacCCaCGg -3'
miRNA:   3'- aGUCGCGCCG--CG----------CGUGCCCGa---GGaGC- -5'
25739 5' -63.5 NC_005337.1 + 863 0.66 0.565122
Target:  5'- gCAGCGCGG-GCGCGgcCGGGCg----- -3'
miRNA:   3'- aGUCGCGCCgCGCGU--GCCCGaggagc -5'
25739 5' -63.5 NC_005337.1 + 863 0.66 0.565122
Target:  5'- gCAGCGCGG-GCGCGgcCGGGCg----- -3'
miRNA:   3'- aGUCGCGCCgCGCGU--GCCCGaggagc -5'
25739 5' -63.5 NC_005337.1 + 66084 0.66 0.555491
Target:  5'- gCGGCGCccccggGGcCGCGCucaGGGCguaCUCGg -3'
miRNA:   3'- aGUCGCG------CC-GCGCGug-CCCGag-GAGC- -5'
25739 5' -63.5 NC_005337.1 + 131791 0.66 0.555491
Target:  5'- cUCGGCGCGGaCGUcaacuuCACGGGgggCUUCGg -3'
miRNA:   3'- -AGUCGCGCC-GCGc-----GUGCCCga-GGAGC- -5'
25739 5' -63.5 NC_005337.1 + 98880 0.66 0.555491
Target:  5'- --cGCGCcGCGCGCGCGGacuGCgCgCUCGa -3'
miRNA:   3'- aguCGCGcCGCGCGUGCC---CGaG-GAGC- -5'
25739 5' -63.5 NC_005337.1 + 55733 0.66 0.555491
Target:  5'- aCGGCGCGccCGUGUACGGGUccaUCCa-- -3'
miRNA:   3'- aGUCGCGCc-GCGCGUGCCCG---AGGagc -5'
25739 5' -63.5 NC_005337.1 + 89834 0.66 0.555491
Target:  5'- gCAGCagGUGGCGCGCuucACGGccucgagcuGCUUCUCc -3'
miRNA:   3'- aGUCG--CGCCGCGCG---UGCC---------CGAGGAGc -5'
25739 5' -63.5 NC_005337.1 + 108834 0.66 0.555491
Target:  5'- aCGGUGcCGaaGCGCGCGGGCgacacgCCgUCGu -3'
miRNA:   3'- aGUCGC-GCcgCGCGUGCCCGa-----GG-AGC- -5'
25739 5' -63.5 NC_005337.1 + 70114 0.66 0.555491
Target:  5'- cCAGCGUGGUG-GCcUGGGaaaCCUCGu -3'
miRNA:   3'- aGUCGCGCCGCgCGuGCCCga-GGAGC- -5'
25739 5' -63.5 NC_005337.1 + 55351 0.66 0.555491
Target:  5'- -aAGCGCGuGCGCGC----GCUCUUCGa -3'
miRNA:   3'- agUCGCGC-CGCGCGugccCGAGGAGC- -5'
25739 5' -63.5 NC_005337.1 + 82358 0.66 0.555491
Target:  5'- -gAGCGUGGcCGCcgacuGCACGGcGCcgagggCCUCGu -3'
miRNA:   3'- agUCGCGCC-GCG-----CGUGCC-CGa-----GGAGC- -5'
25739 5' -63.5 NC_005337.1 + 65720 0.66 0.54591
Target:  5'- gCGGUGgGGCGCGCcCGGcGC-CgUCa -3'
miRNA:   3'- aGUCGCgCCGCGCGuGCC-CGaGgAGc -5'
25739 5' -63.5 NC_005337.1 + 35392 0.66 0.54591
Target:  5'- -gAGCGCGcaguccGCGCGCGCGGcGCgguaguacUgCUCGa -3'
miRNA:   3'- agUCGCGC------CGCGCGUGCC-CG--------AgGAGC- -5'
25739 5' -63.5 NC_005337.1 + 36766 0.66 0.54591
Target:  5'- -gGGCaCGGUGUGCACGcGGa-CCUCGu -3'
miRNA:   3'- agUCGcGCCGCGCGUGC-CCgaGGAGC- -5'
25739 5' -63.5 NC_005337.1 + 82568 0.66 0.54591
Target:  5'- gCAGCaCGGCGCGCugGauCUCCa-- -3'
miRNA:   3'- aGUCGcGCCGCGCGugCccGAGGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.