miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25740 3' -57.3 NC_005337.1 + 74903 0.66 0.853681
Target:  5'- --cCGGGgGCGUgaUGGCGcggcuggcggccuucGCGCGCGCGg -3'
miRNA:   3'- auaGCCCaCGCA--GCUGC---------------UGUGCGCGU- -5'
25740 3' -57.3 NC_005337.1 + 26769 0.66 0.850543
Target:  5'- gGUCGucGUGCGacccacguccUCGACGACGgcCGUGCAg -3'
miRNA:   3'- aUAGCc-CACGC----------AGCUGCUGU--GCGCGU- -5'
25740 3' -57.3 NC_005337.1 + 34553 0.66 0.850543
Target:  5'- --gCGGGagaGCGUccuguccgCGACGAUggccGCGCGCAg -3'
miRNA:   3'- auaGCCCa--CGCA--------GCUGCUG----UGCGCGU- -5'
25740 3' -57.3 NC_005337.1 + 57714 0.66 0.842559
Target:  5'- --gCGcGGUGCa-CGACGACcacaacgccACGCGCAa -3'
miRNA:   3'- auaGC-CCACGcaGCUGCUG---------UGCGCGU- -5'
25740 3' -57.3 NC_005337.1 + 131245 0.66 0.842559
Target:  5'- --aCGuGGUcGCGcacaUCGGCGcGCACGCGCu -3'
miRNA:   3'- auaGC-CCA-CGC----AGCUGC-UGUGCGCGu -5'
25740 3' -57.3 NC_005337.1 + 96832 0.66 0.842559
Target:  5'- --gCGGGUGCGcagccgCGGCGugGCGUucccccggcuccGCGa -3'
miRNA:   3'- auaGCCCACGCa-----GCUGCugUGCG------------CGU- -5'
25740 3' -57.3 NC_005337.1 + 10271 0.66 0.842559
Target:  5'- cAUCGGcGgcgGCG-CGuucagcAUGGCGCGCGCAu -3'
miRNA:   3'- aUAGCC-Ca--CGCaGC------UGCUGUGCGCGU- -5'
25740 3' -57.3 NC_005337.1 + 133026 0.66 0.834385
Target:  5'- gAUCGGGUGCca-GGCuaucACAgGCGCAu -3'
miRNA:   3'- aUAGCCCACGcagCUGc---UGUgCGCGU- -5'
25740 3' -57.3 NC_005337.1 + 7457 0.66 0.834385
Target:  5'- cGUCGGcGUcCGU-GGCGACgaggGCGCGCAc -3'
miRNA:   3'- aUAGCC-CAcGCAgCUGCUG----UGCGCGU- -5'
25740 3' -57.3 NC_005337.1 + 55168 0.66 0.834385
Target:  5'- -uUCGuGcGCGUCGACGacgugccgguggGCAUGCGCGu -3'
miRNA:   3'- auAGCcCaCGCAGCUGC------------UGUGCGCGU- -5'
25740 3' -57.3 NC_005337.1 + 64789 0.66 0.834385
Target:  5'- --cCGGGgguccuccGCG-CGGCGGCACGaCGCc -3'
miRNA:   3'- auaGCCCa-------CGCaGCUGCUGUGC-GCGu -5'
25740 3' -57.3 NC_005337.1 + 2307 0.66 0.833558
Target:  5'- gGUCGGGaGCGUCGgugGCGGCAUuuauccaGCGgGa -3'
miRNA:   3'- aUAGCCCaCGCAGC---UGCUGUG-------CGCgU- -5'
25740 3' -57.3 NC_005337.1 + 60923 0.66 0.829393
Target:  5'- gGUCGGGcacGCGacgcgccacugccgCGcCGGCAUGCGCAu -3'
miRNA:   3'- aUAGCCCa--CGCa-------------GCuGCUGUGCGCGU- -5'
25740 3' -57.3 NC_005337.1 + 125950 0.66 0.826028
Target:  5'- -cUCGaGGcggGCGUgGGCGugAaCGCGCGg -3'
miRNA:   3'- auAGC-CCa--CGCAgCUGCugU-GCGCGU- -5'
25740 3' -57.3 NC_005337.1 + 77468 0.66 0.817496
Target:  5'- --gUGGcGUGCG-CGGCGACGCGUcccgggGCGg -3'
miRNA:   3'- auaGCC-CACGCaGCUGCUGUGCG------CGU- -5'
25740 3' -57.3 NC_005337.1 + 127795 0.66 0.817496
Target:  5'- --gCGGGUGC-UgGugGACGCcgGCGCu -3'
miRNA:   3'- auaGCCCACGcAgCugCUGUG--CGCGu -5'
25740 3' -57.3 NC_005337.1 + 4773 0.66 0.817496
Target:  5'- -------cGCGUCGAUGACGCGCGgGu -3'
miRNA:   3'- auagcccaCGCAGCUGCUGUGCGCgU- -5'
25740 3' -57.3 NC_005337.1 + 84259 0.67 0.808795
Target:  5'- --aCGuGUGCGUCGACGugGucaccguuccguCGUGCAc -3'
miRNA:   3'- auaGCcCACGCAGCUGCugU------------GCGCGU- -5'
25740 3' -57.3 NC_005337.1 + 30894 0.67 0.808795
Target:  5'- -uUCGGGU-CGUagCGACGGCAgGCGa- -3'
miRNA:   3'- auAGCCCAcGCA--GCUGCUGUgCGCgu -5'
25740 3' -57.3 NC_005337.1 + 13919 0.67 0.808795
Target:  5'- cGUCGGG----UCGugGGCGgGCGCAg -3'
miRNA:   3'- aUAGCCCacgcAGCugCUGUgCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.