miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25740 5' -58 NC_005337.1 + 130160 0.66 0.824858
Target:  5'- cUCGCGCGcuuucGGAggccgugcGCGCgGAGCACGcGGAg -3'
miRNA:   3'- cAGCGUGCa----CCU--------CGCG-CUCGUGC-UCU- -5'
25740 5' -58 NC_005337.1 + 994 0.66 0.824858
Target:  5'- --gGCGCGcGGAGgGCGGGCGuCGccuGGAg -3'
miRNA:   3'- cagCGUGCaCCUCgCGCUCGU-GC---UCU- -5'
25740 5' -58 NC_005337.1 + 25454 0.66 0.824858
Target:  5'- uUCgGCAcCGUGGAcgcGUGCGuGgACGAGAu -3'
miRNA:   3'- cAG-CGU-GCACCU---CGCGCuCgUGCUCU- -5'
25740 5' -58 NC_005337.1 + 88970 0.66 0.824858
Target:  5'- --gGCGCGgucccGGuGUGCGAccugGCGCGGGAg -3'
miRNA:   3'- cagCGUGCa----CCuCGCGCU----CGUGCUCU- -5'
25740 5' -58 NC_005337.1 + 124795 0.66 0.824858
Target:  5'- aUCGcCGCGcUGGAGUG-GGGCcgcaGCGAGGa -3'
miRNA:   3'- cAGC-GUGC-ACCUCGCgCUCG----UGCUCU- -5'
25740 5' -58 NC_005337.1 + 994 0.66 0.824858
Target:  5'- --gGCGCGcGGAGgGCGGGCGuCGccuGGAg -3'
miRNA:   3'- cagCGUGCaCCUCgCGCUCGU-GC---UCU- -5'
25740 5' -58 NC_005337.1 + 40659 0.66 0.824858
Target:  5'- -aCGCA-GUGGGGCGCccucuaGGCGCGGcGAc -3'
miRNA:   3'- caGCGUgCACCUCGCGc-----UCGUGCU-CU- -5'
25740 5' -58 NC_005337.1 + 107159 0.66 0.824858
Target:  5'- -cUGCGCGUGGccaAGCGgcuGCugGAGAu -3'
miRNA:   3'- caGCGUGCACC---UCGCgcuCGugCUCU- -5'
25740 5' -58 NC_005337.1 + 33277 0.66 0.816332
Target:  5'- -cCGCGCGUGGAGauCGAGUgguGCaGGAu -3'
miRNA:   3'- caGCGUGCACCUCgcGCUCG---UGcUCU- -5'
25740 5' -58 NC_005337.1 + 129530 0.66 0.816332
Target:  5'- cUCGCGCGc--GGCGCGAGCGucCGuGAu -3'
miRNA:   3'- cAGCGUGCaccUCGCGCUCGU--GCuCU- -5'
25740 5' -58 NC_005337.1 + 77405 0.66 0.816332
Target:  5'- -cCGCGggagGUGGAuGUGCGGGCccaGCGAGGc -3'
miRNA:   3'- caGCGUg---CACCU-CGCGCUCG---UGCUCU- -5'
25740 5' -58 NC_005337.1 + 66118 0.66 0.816332
Target:  5'- -gCGCGCGUGGAguucaaguccaaGCGCGuGgACGGu- -3'
miRNA:   3'- caGCGUGCACCU------------CGCGCuCgUGCUcu -5'
25740 5' -58 NC_005337.1 + 42556 0.66 0.816332
Target:  5'- -gCGCugGUGcGGCuGCG-GCugGAGGc -3'
miRNA:   3'- caGCGugCACcUCG-CGCuCGugCUCU- -5'
25740 5' -58 NC_005337.1 + 97502 0.66 0.816332
Target:  5'- gGUCGCACGaGGucCGCGuGCACaccgugcccgugGAGAu -3'
miRNA:   3'- -CAGCGUGCaCCucGCGCuCGUG------------CUCU- -5'
25740 5' -58 NC_005337.1 + 125956 0.66 0.816332
Target:  5'- -gCGgGCGUGG-GCGUGAacGCGCG-GAa -3'
miRNA:   3'- caGCgUGCACCuCGCGCU--CGUGCuCU- -5'
25740 5' -58 NC_005337.1 + 79591 0.66 0.816332
Target:  5'- -aCGUcCGUGGuguaggggucGCGCGAGCGCaGGAg -3'
miRNA:   3'- caGCGuGCACCu---------CGCGCUCGUGcUCU- -5'
25740 5' -58 NC_005337.1 + 119425 0.66 0.816332
Target:  5'- --aGCGagGUGGAuaGCGcGCGCGAGAa -3'
miRNA:   3'- cagCGUg-CACCUcgCGCuCGUGCUCU- -5'
25740 5' -58 NC_005337.1 + 123633 0.66 0.807641
Target:  5'- -aCGCuCGUGGAGCucugcaGCG-GCGCGAc- -3'
miRNA:   3'- caGCGuGCACCUCG------CGCuCGUGCUcu -5'
25740 5' -58 NC_005337.1 + 110748 0.66 0.807641
Target:  5'- -cCGC-CGgGGucCGCGAGCAgCGAGAa -3'
miRNA:   3'- caGCGuGCaCCucGCGCUCGU-GCUCU- -5'
25740 5' -58 NC_005337.1 + 92599 0.66 0.807641
Target:  5'- uUCGacgACGUGGAcguccGCGCcuucgccaagGAGCugGAGAa -3'
miRNA:   3'- cAGCg--UGCACCU-----CGCG----------CUCGugCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.