miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25741 3' -62.5 NC_005337.1 + 88258 0.66 0.598297
Target:  5'- cGUGC-CGgcGCGCCGGCG--GGCGCCg- -3'
miRNA:   3'- -CGCGaGC--UGCGGUCGCggUCGCGGag -5'
25741 3' -62.5 NC_005337.1 + 1952 0.66 0.598297
Target:  5'- aUGCUCuGgGCCAGCGCCcccucCGCCg- -3'
miRNA:   3'- cGCGAGcUgCGGUCGCGGuc---GCGGag -5'
25741 3' -62.5 NC_005337.1 + 114313 0.66 0.598297
Target:  5'- -aGCUcucgCGGCGCCGGUGCgGaGC-CCUCu -3'
miRNA:   3'- cgCGA----GCUGCGGUCGCGgU-CGcGGAG- -5'
25741 3' -62.5 NC_005337.1 + 49734 0.66 0.598297
Target:  5'- -aGCggGACGCCGgacacgguGCGCCGGUGCgUg -3'
miRNA:   3'- cgCGagCUGCGGU--------CGCGGUCGCGgAg -5'
25741 3' -62.5 NC_005337.1 + 16085 0.66 0.598297
Target:  5'- cGCGCccacCGGCGCgAGCucgaacggguccGCCgcGGCGCCgUCa -3'
miRNA:   3'- -CGCGa---GCUGCGgUCG------------CGG--UCGCGG-AG- -5'
25741 3' -62.5 NC_005337.1 + 2157 0.66 0.598297
Target:  5'- gGCGUUC-ACGUCGGCacCCAGCGCg-- -3'
miRNA:   3'- -CGCGAGcUGCGGUCGc-GGUCGCGgag -5'
25741 3' -62.5 NC_005337.1 + 58022 0.66 0.598297
Target:  5'- cGUGCUCGGCcagGCC-GCGCUcuucgacggcGGCGUgCUCg -3'
miRNA:   3'- -CGCGAGCUG---CGGuCGCGG----------UCGCG-GAG- -5'
25741 3' -62.5 NC_005337.1 + 71332 0.66 0.597308
Target:  5'- cCGCgCGGCGgCGGUGCacaacaucgaguaCAGCGCCgUCa -3'
miRNA:   3'- cGCGaGCUGCgGUCGCG-------------GUCGCGG-AG- -5'
25741 3' -62.5 NC_005337.1 + 115612 0.66 0.597308
Target:  5'- gGCcCUCGGauccgccCGCCGGCGgCGGCGCg-- -3'
miRNA:   3'- -CGcGAGCU-------GCGGUCGCgGUCGCGgag -5'
25741 3' -62.5 NC_005337.1 + 97998 0.66 0.59533
Target:  5'- aCGCagGACGCgCAGUGCgGcaucgcguaccaguGUGCCUCg -3'
miRNA:   3'- cGCGagCUGCG-GUCGCGgU--------------CGCGGAG- -5'
25741 3' -62.5 NC_005337.1 + 108970 0.66 0.592366
Target:  5'- cGCGCcggUCGACGCgCGGCccgcccGCCgugcgcgcgaacuccAGCGCCg- -3'
miRNA:   3'- -CGCG---AGCUGCG-GUCG------CGG---------------UCGCGGag -5'
25741 3' -62.5 NC_005337.1 + 80166 0.66 0.588417
Target:  5'- cGCGCUCcACGUagCAGCGCCcguacaCGCCg- -3'
miRNA:   3'- -CGCGAGcUGCG--GUCGCGGuc----GCGGag -5'
25741 3' -62.5 NC_005337.1 + 76817 0.66 0.588417
Target:  5'- cGCGCUUGAUGCgCAGgcgguggaUGCgCAGCGCacgCg -3'
miRNA:   3'- -CGCGAGCUGCG-GUC--------GCG-GUCGCGga-G- -5'
25741 3' -62.5 NC_005337.1 + 126425 0.66 0.588417
Target:  5'- gGCGCgCGACGgC-GCGCguGCGCgUg -3'
miRNA:   3'- -CGCGaGCUGCgGuCGCGguCGCGgAg -5'
25741 3' -62.5 NC_005337.1 + 111257 0.66 0.588417
Target:  5'- cGUcCUCGACG-CGGCGCaAGUGCCg- -3'
miRNA:   3'- -CGcGAGCUGCgGUCGCGgUCGCGGag -5'
25741 3' -62.5 NC_005337.1 + 24402 0.66 0.588417
Target:  5'- cGUGCUCGACcggaagGCCGggcuGUGCguGCaCCUCa -3'
miRNA:   3'- -CGCGAGCUG------CGGU----CGCGguCGcGGAG- -5'
25741 3' -62.5 NC_005337.1 + 8742 0.66 0.588417
Target:  5'- gGCGCg-GAUGUCGGCGCCguaccgcacgAGCaGCCg- -3'
miRNA:   3'- -CGCGagCUGCGGUCGCGG----------UCG-CGGag -5'
25741 3' -62.5 NC_005337.1 + 123832 0.66 0.587431
Target:  5'- gGCGCaCGACGCgCGcaccgccGCGCaGGCGuCCUCc -3'
miRNA:   3'- -CGCGaGCUGCG-GU-------CGCGgUCGC-GGAG- -5'
25741 3' -62.5 NC_005337.1 + 120959 0.66 0.587431
Target:  5'- gGCGagcaUCGACGCCaAGgGCCAcuGCGagcccgcCCUCc -3'
miRNA:   3'- -CGCg---AGCUGCGG-UCgCGGU--CGC-------GGAG- -5'
25741 3' -62.5 NC_005337.1 + 132914 0.66 0.582503
Target:  5'- cGCGCUCagauGACGCgAGCGCgGaguucaacuaccgccGCcgcgGCCUCg -3'
miRNA:   3'- -CGCGAG----CUGCGgUCGCGgU---------------CG----CGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.