miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25741 5' -57.1 NC_005337.1 + 82682 0.66 0.83628
Target:  5'- -gGUGGUuGUGGUggAGCugCugCAGc -3'
miRNA:   3'- caCACCGuCGCCAagUCGugGugGUC- -5'
25741 5' -57.1 NC_005337.1 + 66644 0.66 0.83628
Target:  5'- -gGUGGgAGUGGUgCGGCGCCgACUu- -3'
miRNA:   3'- caCACCgUCGCCAaGUCGUGG-UGGuc -5'
25741 5' -57.1 NC_005337.1 + 89908 0.66 0.83628
Target:  5'- gGUG-GGCGGCGGggCGuCGCC-CCAc -3'
miRNA:   3'- -CACaCCGUCGCCaaGUcGUGGuGGUc -5'
25741 5' -57.1 NC_005337.1 + 3124 0.66 0.83628
Target:  5'- ----aGCAGCGuGUgCAGCACgCGCCGGu -3'
miRNA:   3'- cacacCGUCGC-CAaGUCGUG-GUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 54263 0.66 0.827833
Target:  5'- ---cGGguGCGGcgcUUAGCGCCGCgCGGc -3'
miRNA:   3'- cacaCCguCGCCa--AGUCGUGGUG-GUC- -5'
25741 5' -57.1 NC_005337.1 + 97333 0.66 0.826978
Target:  5'- -gGUGGC-GCGGUUCcuggugaAGUAcCCGCCGc -3'
miRNA:   3'- caCACCGuCGCCAAG-------UCGU-GGUGGUc -5'
25741 5' -57.1 NC_005337.1 + 41762 0.66 0.822676
Target:  5'- ---cGGCGGCuaugauguagccgucGGccuucUUCGGCAUCACCAGg -3'
miRNA:   3'- cacaCCGUCG---------------CC-----AAGUCGUGGUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 68414 0.66 0.819203
Target:  5'- -cGUGGUAGCGc----GCGCCGCCGa -3'
miRNA:   3'- caCACCGUCGCcaaguCGUGGUGGUc -5'
25741 5' -57.1 NC_005337.1 + 29036 0.66 0.819203
Target:  5'- -cGUGGUGGUGGg--GGCGCCACg-- -3'
miRNA:   3'- caCACCGUCGCCaagUCGUGGUGguc -5'
25741 5' -57.1 NC_005337.1 + 95114 0.66 0.81833
Target:  5'- -aGUcGGCGaucauguccgcgcGCGaGUUCuGCAUCACCAGg -3'
miRNA:   3'- caCA-CCGU-------------CGC-CAAGuCGUGGUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 91806 0.66 0.810398
Target:  5'- ---cGGCGGCGGUggcgGGUACCGCUu- -3'
miRNA:   3'- cacaCCGUCGCCAag--UCGUGGUGGuc -5'
25741 5' -57.1 NC_005337.1 + 49925 0.66 0.810398
Target:  5'- ---aGGCGcgagcGCGGggaCAGCACgACCAGg -3'
miRNA:   3'- cacaCCGU-----CGCCaa-GUCGUGgUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 94767 0.66 0.801427
Target:  5'- ---gGGC-GUGGacacCAGCACCGCCGGu -3'
miRNA:   3'- cacaCCGuCGCCaa--GUCGUGGUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 128800 0.66 0.801427
Target:  5'- -cGUGcGCAccgaGCGGUgccGCACCACCGu -3'
miRNA:   3'- caCAC-CGU----CGCCAaguCGUGGUGGUc -5'
25741 5' -57.1 NC_005337.1 + 31262 0.66 0.801427
Target:  5'- ---cGGCAGCGGaugCGGUG-CGCCAGg -3'
miRNA:   3'- cacaCCGUCGCCaa-GUCGUgGUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 1486 0.66 0.800521
Target:  5'- -cGUGGUcuCGGUgggcaccgucaccUCGGCGCgCGCCAGc -3'
miRNA:   3'- caCACCGucGCCA-------------AGUCGUG-GUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 132601 0.66 0.792299
Target:  5'- cUGcGGCuGCGGUUCAgguucgcgacGCGCCugCGa -3'
miRNA:   3'- cACaCCGuCGCCAAGU----------CGUGGugGUc -5'
25741 5' -57.1 NC_005337.1 + 68621 0.67 0.773606
Target:  5'- -gGUGG-GGUGGUUCGGCGCgcagcugagcgCACUAGg -3'
miRNA:   3'- caCACCgUCGCCAAGUCGUG-----------GUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 78440 0.67 0.773606
Target:  5'- gGUGUGaagucgcgcccGUAGCgcccgagcaGGUUCAGCACCucguCCAGc -3'
miRNA:   3'- -CACAC-----------CGUCG---------CCAAGUCGUGGu---GGUC- -5'
25741 5' -57.1 NC_005337.1 + 38441 0.67 0.773606
Target:  5'- ---cGGCcGCGGUUCuGCcuGCUGCCGGa -3'
miRNA:   3'- cacaCCGuCGCCAAGuCG--UGGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.