miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25741 5' -57.1 NC_005337.1 + 33717 0.67 0.764061
Target:  5'- -gGUGGCGccgaggauGCGGUcgcgCAGCACC-CCGu -3'
miRNA:   3'- caCACCGU--------CGCCAa---GUCGUGGuGGUc -5'
25741 5' -57.1 NC_005337.1 + 62380 0.67 0.764061
Target:  5'- -gGUGcGCAggucgcugguGCGGUUCAcCACCGCCGc -3'
miRNA:   3'- caCAC-CGU----------CGCCAAGUcGUGGUGGUc -5'
25741 5' -57.1 NC_005337.1 + 40512 0.67 0.754395
Target:  5'- -cGUGGUGcGUGGU--GGCGCUACCGGc -3'
miRNA:   3'- caCACCGU-CGCCAagUCGUGGUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 52055 0.67 0.754395
Target:  5'- cUGcGGgAGCuGGUUCGGCucuucgACCGCCGGc -3'
miRNA:   3'- cACaCCgUCG-CCAAGUCG------UGGUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 854 0.67 0.754395
Target:  5'- ---aGGCGGCGGgcagCgcgGGCGCgGCCGGg -3'
miRNA:   3'- cacaCCGUCGCCaa--G---UCGUGgUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 854 0.67 0.754395
Target:  5'- ---aGGCGGCGGgcagCgcgGGCGCgGCCGGg -3'
miRNA:   3'- cacaCCGUCGCCaa--G---UCGUGgUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 79389 0.67 0.748542
Target:  5'- gGUGUGGUugagcugcuccacgcGGCGGcgCGGCAUCucgaugaacGCCGGg -3'
miRNA:   3'- -CACACCG---------------UCGCCaaGUCGUGG---------UGGUC- -5'
25741 5' -57.1 NC_005337.1 + 10277 0.67 0.744619
Target:  5'- ---cGGCGGCGcGUUCAGCAUgGCg-- -3'
miRNA:   3'- cacaCCGUCGC-CAAGUCGUGgUGguc -5'
25741 5' -57.1 NC_005337.1 + 95438 0.67 0.744619
Target:  5'- ---gGGCAGCGa--UAGCACUACCGGc -3'
miRNA:   3'- cacaCCGUCGCcaaGUCGUGGUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 59448 0.67 0.744619
Target:  5'- aGUGcGGCAucaGGaUCAGCAgCACCAGc -3'
miRNA:   3'- -CACaCCGUcg-CCaAGUCGUgGUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 36419 0.67 0.734741
Target:  5'- ---cGGCGGCGGccaccgcCAGCGCguCCAGg -3'
miRNA:   3'- cacaCCGUCGCCaa-----GUCGUGguGGUC- -5'
25741 5' -57.1 NC_005337.1 + 34843 0.67 0.734741
Target:  5'- -gGUGGCccacgccGCGGcUCAGCACgCACCc- -3'
miRNA:   3'- caCACCGu------CGCCaAGUCGUG-GUGGuc -5'
25741 5' -57.1 NC_005337.1 + 36930 0.68 0.724772
Target:  5'- aUG-GGCGGCGGguacUUCAccaggaaccGCGCCACCGc -3'
miRNA:   3'- cACaCCGUCGCC----AAGU---------CGUGGUGGUc -5'
25741 5' -57.1 NC_005337.1 + 107063 0.68 0.724772
Target:  5'- --cUGGCGGCGG--CGGCG-CGCCAGg -3'
miRNA:   3'- cacACCGUCGCCaaGUCGUgGUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 59813 0.68 0.714721
Target:  5'- -cGUcGGUGGUGGUg-AGCACCGCgCAGa -3'
miRNA:   3'- caCA-CCGUCGCCAagUCGUGGUG-GUC- -5'
25741 5' -57.1 NC_005337.1 + 123790 0.68 0.713711
Target:  5'- -gGUGGUcuggacgGGCGuGUUCuGCGCCGCCc- -3'
miRNA:   3'- caCACCG-------UCGC-CAAGuCGUGGUGGuc -5'
25741 5' -57.1 NC_005337.1 + 113908 0.68 0.711691
Target:  5'- ---cGGUGGUGGUcucgaacaagaccgUgAGCACCGCCAGc -3'
miRNA:   3'- cacaCCGUCGCCA--------------AgUCGUGGUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 71108 0.68 0.708655
Target:  5'- ---gGGCGGCGGgcUCAGCACguccucgggcggcggCACCGGc -3'
miRNA:   3'- cacaCCGUCGCCa-AGUCGUG---------------GUGGUC- -5'
25741 5' -57.1 NC_005337.1 + 104596 0.68 0.704597
Target:  5'- -cGUcGGCGGCGaGcauaCGGCGCCACCGc -3'
miRNA:   3'- caCA-CCGUCGC-Caa--GUCGUGGUGGUc -5'
25741 5' -57.1 NC_005337.1 + 115631 0.68 0.684171
Target:  5'- ---cGGCGGCGGcgCGGCcGCCAUCGc -3'
miRNA:   3'- cacaCCGUCGCCaaGUCG-UGGUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.