miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25742 3' -59.7 NC_005337.1 + 18851 0.66 0.715293
Target:  5'- cGCCAGCacgcgCCGCaugauaucGGGGGUCACGucGCa- -3'
miRNA:   3'- cUGGUCGa----GGCG--------CCCCUAGUGU--CGag -5'
25742 3' -59.7 NC_005337.1 + 12344 0.66 0.715293
Target:  5'- gGugCAGCgccguccgUCCGCGGacGUCGCGGCg- -3'
miRNA:   3'- -CugGUCG--------AGGCGCCccUAGUGUCGag -5'
25742 3' -59.7 NC_005337.1 + 44410 0.66 0.705372
Target:  5'- cGCCAGCg-CGCGcucGGAgaaGCAGCUCg -3'
miRNA:   3'- cUGGUCGagGCGCc--CCUag-UGUCGAG- -5'
25742 3' -59.7 NC_005337.1 + 97731 0.66 0.69539
Target:  5'- cGCCGGCgccgcccagCCGcCGGGGAcgccCGCGGCg- -3'
miRNA:   3'- cUGGUCGa--------GGC-GCCCCUa---GUGUCGag -5'
25742 3' -59.7 NC_005337.1 + 19339 0.66 0.69539
Target:  5'- uGGCCagcAGCUCCGCGuGGcUCAgGGCg- -3'
miRNA:   3'- -CUGG---UCGAGGCGCcCCuAGUgUCGag -5'
25742 3' -59.7 NC_005337.1 + 43526 0.66 0.69539
Target:  5'- --gCAGCUCCGUGGaGGAgcgCAucCAGCa- -3'
miRNA:   3'- cugGUCGAGGCGCC-CCUa--GU--GUCGag -5'
25742 3' -59.7 NC_005337.1 + 30157 0.66 0.675278
Target:  5'- aACCAGgUCCuGgGGGGAgaUCuuCAGCUUg -3'
miRNA:   3'- cUGGUCgAGG-CgCCCCU--AGu-GUCGAG- -5'
25742 3' -59.7 NC_005337.1 + 61246 0.66 0.672247
Target:  5'- aGCCGGCUCCcgucgucguucucCGGGGAguuguacgccuccaGCAGCUCc -3'
miRNA:   3'- cUGGUCGAGGc------------GCCCCUag------------UGUCGAG- -5'
25742 3' -59.7 NC_005337.1 + 49549 0.67 0.665165
Target:  5'- aGACCAGCUCCgGCGccGGGAaCACG--UCg -3'
miRNA:   3'- -CUGGUCGAGG-CGC--CCCUaGUGUcgAG- -5'
25742 3' -59.7 NC_005337.1 + 82192 0.67 0.655026
Target:  5'- aGGCUGGaggaUCCGCuGGGGAggUACAGCa- -3'
miRNA:   3'- -CUGGUCg---AGGCG-CCCCUa-GUGUCGag -5'
25742 3' -59.7 NC_005337.1 + 20775 0.67 0.644869
Target:  5'- cGGCCAcgcGCUUCGCGGGGAcgggcgugcCGgAGCUg -3'
miRNA:   3'- -CUGGU---CGAGGCGCCCCUa--------GUgUCGAg -5'
25742 3' -59.7 NC_005337.1 + 56469 0.67 0.644869
Target:  5'- uGGCCAGCgacCCGCGGcgccaGGAuaUCGCcaAGUUCg -3'
miRNA:   3'- -CUGGUCGa--GGCGCC-----CCU--AGUG--UCGAG- -5'
25742 3' -59.7 NC_005337.1 + 96861 0.67 0.634702
Target:  5'- -cCCGGCUCCGCGacuccgcgcGGAUgCGCGGCg- -3'
miRNA:   3'- cuGGUCGAGGCGCc--------CCUA-GUGUCGag -5'
25742 3' -59.7 NC_005337.1 + 64921 0.67 0.634702
Target:  5'- cGGCCGGC-CCGCGcGGGAaagCGCGcGC-Cg -3'
miRNA:   3'- -CUGGUCGaGGCGC-CCCUa--GUGU-CGaG- -5'
25742 3' -59.7 NC_005337.1 + 49123 0.67 0.634702
Target:  5'- cGACUcGCUCCGCGGGa-----AGCUCg -3'
miRNA:   3'- -CUGGuCGAGGCGCCCcuagugUCGAG- -5'
25742 3' -59.7 NC_005337.1 + 101211 0.67 0.624533
Target:  5'- cGCCuGCUUCGCGGaGGUCGCGGaggCg -3'
miRNA:   3'- cUGGuCGAGGCGCCcCUAGUGUCga-G- -5'
25742 3' -59.7 NC_005337.1 + 53956 0.67 0.624533
Target:  5'- aACC-GCUCCGCGGuGGcGUC-UAGCUUg -3'
miRNA:   3'- cUGGuCGAGGCGCC-CC-UAGuGUCGAG- -5'
25742 3' -59.7 NC_005337.1 + 88268 0.67 0.624533
Target:  5'- cGCCGGCgggcgCCGCGGaGGA-CAUGGC-Cg -3'
miRNA:   3'- cUGGUCGa----GGCGCC-CCUaGUGUCGaG- -5'
25742 3' -59.7 NC_005337.1 + 42626 0.67 0.61437
Target:  5'- uGugCGGCaCCGCGGuGGUCgACGGCUg -3'
miRNA:   3'- -CugGUCGaGGCGCCcCUAG-UGUCGAg -5'
25742 3' -59.7 NC_005337.1 + 44015 0.67 0.61437
Target:  5'- -uCCAGCUCCGCGGuGGu-----GCUCu -3'
miRNA:   3'- cuGGUCGAGGCGCC-CCuaguguCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.