miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25742 5' -57.5 NC_005337.1 + 129308 0.66 0.838384
Target:  5'- uGGGGCGCGCG---CUCCgGCAacUCCc -3'
miRNA:   3'- gCCUCGCGUGCcuaGAGGaCGU--AGGu -5'
25742 5' -57.5 NC_005337.1 + 115808 0.66 0.838384
Target:  5'- uGGAcaugGCGCGCGGA-CUCCccGCcaGUCCc -3'
miRNA:   3'- gCCU----CGCGUGCCUaGAGGa-CG--UAGGu -5'
25742 5' -57.5 NC_005337.1 + 42888 0.66 0.833435
Target:  5'- gCGGGGCGCcgccgaggucuucgaGCGGG-CUCCgGCGUgCu -3'
miRNA:   3'- -GCCUCGCG---------------UGCCUaGAGGaCGUAgGu -5'
25742 5' -57.5 NC_005337.1 + 68204 0.66 0.830098
Target:  5'- gGGGGCGCcgcuGCGGGcCcgCCUgacgGCGUCCGg -3'
miRNA:   3'- gCCUCGCG----UGCCUaGa-GGA----CGUAGGU- -5'
25742 5' -57.5 NC_005337.1 + 104925 0.66 0.830098
Target:  5'- cCGGugcucacGCGCAUGGA-CUCCacgcacGUAUCCAa -3'
miRNA:   3'- -GCCu------CGCGUGCCUaGAGGa-----CGUAGGU- -5'
25742 5' -57.5 NC_005337.1 + 85743 0.66 0.830098
Target:  5'- gCGGAcGCGgACGcGGUCUgCUGCAgcucauugcguaUCCGc -3'
miRNA:   3'- -GCCU-CGCgUGC-CUAGAgGACGU------------AGGU- -5'
25742 5' -57.5 NC_005337.1 + 36384 0.66 0.821632
Target:  5'- uGGAGUacGCcgACGaGAaCUCCUGCAccUCCAc -3'
miRNA:   3'- gCCUCG--CG--UGC-CUaGAGGACGU--AGGU- -5'
25742 5' -57.5 NC_005337.1 + 90764 0.66 0.821632
Target:  5'- aCGGAGC-UGCGGAacUCgUCCU-CGUCCAu -3'
miRNA:   3'- -GCCUCGcGUGCCU--AG-AGGAcGUAGGU- -5'
25742 5' -57.5 NC_005337.1 + 44559 0.66 0.821632
Target:  5'- uGGAGCgGUAcCGGGUCUUCguggaGCuGUCCAa -3'
miRNA:   3'- gCCUCG-CGU-GCCUAGAGGa----CG-UAGGU- -5'
25742 5' -57.5 NC_005337.1 + 98676 0.66 0.812993
Target:  5'- gCGGAGCcacggugcuccgGCGgGGAUCcgCCUcgcuagGCAUCCGc -3'
miRNA:   3'- -GCCUCG------------CGUgCCUAGa-GGA------CGUAGGU- -5'
25742 5' -57.5 NC_005337.1 + 10569 0.66 0.80419
Target:  5'- cCGGAGUGgagGCGGAUCUCCgcgacgaGCccgGUCCc -3'
miRNA:   3'- -GCCUCGCg--UGCCUAGAGGa------CG---UAGGu -5'
25742 5' -57.5 NC_005337.1 + 127617 0.66 0.80419
Target:  5'- uGuGGGUGCACgccgcuGGAUCUUCUGCucauGUCCu -3'
miRNA:   3'- gC-CUCGCGUG------CCUAGAGGACG----UAGGu -5'
25742 5' -57.5 NC_005337.1 + 62876 0.66 0.803301
Target:  5'- gCGGAaguaguuGCGC-UGGAUCUUg-GCGUCCAg -3'
miRNA:   3'- -GCCU-------CGCGuGCCUAGAGgaCGUAGGU- -5'
25742 5' -57.5 NC_005337.1 + 48695 0.66 0.803301
Target:  5'- cCGGGGCGCcaACGGcucgaacucgAUCaugaagaUCCUGCAgggCCAc -3'
miRNA:   3'- -GCCUCGCG--UGCC----------UAG-------AGGACGUa--GGU- -5'
25742 5' -57.5 NC_005337.1 + 69211 0.66 0.795231
Target:  5'- uGGGGCGCACGGAcUUCCagaacgUGCGcgcgcgCCu -3'
miRNA:   3'- gCCUCGCGUGCCUaGAGG------ACGUa-----GGu -5'
25742 5' -57.5 NC_005337.1 + 2624 0.66 0.792515
Target:  5'- gCGGcGCGCACGGG-CUCCUcgaagcggaaggugGCG-CCGg -3'
miRNA:   3'- -GCCuCGCGUGCCUaGAGGA--------------CGUaGGU- -5'
25742 5' -57.5 NC_005337.1 + 48882 0.67 0.785207
Target:  5'- gCGGAgagcgccGCGCACGG--CUCCagUGCAUCUc -3'
miRNA:   3'- -GCCU-------CGCGUGCCuaGAGG--ACGUAGGu -5'
25742 5' -57.5 NC_005337.1 + 125096 0.67 0.785207
Target:  5'- gCGuGGCcaaGCACcugaccgGGGUCUCCgGCAUCCAg -3'
miRNA:   3'- -GCcUCG---CGUG-------CCUAGAGGaCGUAGGU- -5'
25742 5' -57.5 NC_005337.1 + 26597 0.67 0.776881
Target:  5'- gGGAGCGacaCGCGGGgucCUCCaGC-UCCAc -3'
miRNA:   3'- gCCUCGC---GUGCCUa--GAGGaCGuAGGU- -5'
25742 5' -57.5 NC_005337.1 + 15724 0.67 0.775949
Target:  5'- uGcGAGCGCGCGaGGUCccacgugUCCUggccgaugGCAUCCGc -3'
miRNA:   3'- gC-CUCGCGUGC-CUAG-------AGGA--------CGUAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.