miRNA display CGI


Results 21 - 40 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25744 5' -64.3 NC_005337.1 + 118121 0.66 0.509745
Target:  5'- aCGCGGCGCGaGCGCUacuucgacgUguGCggUGCCGc -3'
miRNA:   3'- -GCGCCGCGUcCGCGA---------GguCG--ACGGCc -5'
25744 5' -64.3 NC_005337.1 + 18976 0.66 0.509745
Target:  5'- aGCGGCGCGuGUaCUCCuccgcgAGCUcggGCCGGu -3'
miRNA:   3'- gCGCCGCGUcCGcGAGG------UCGA---CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 68437 0.66 0.509745
Target:  5'- -aCGGaguaCAGGCccucgaGCUCCAGC-GCCGGg -3'
miRNA:   3'- gcGCCgc--GUCCG------CGAGGUCGaCGGCC- -5'
25744 5' -64.3 NC_005337.1 + 91513 0.66 0.509745
Target:  5'- gGCGGCGUcgaagcGGGCGCgagaGGC-GUCGGu -3'
miRNA:   3'- gCGCCGCG------UCCGCGagg-UCGaCGGCC- -5'
25744 5' -64.3 NC_005337.1 + 30323 0.66 0.509745
Target:  5'- aCGCGgaggaGCGCAcGCGCUCgCGGUUGuuGa -3'
miRNA:   3'- -GCGC-----CGCGUcCGCGAG-GUCGACggCc -5'
25744 5' -64.3 NC_005337.1 + 104673 0.66 0.508818
Target:  5'- gCGCuGcCGCGGGCGCaagaccaagcucaUCCGGCagGCCa- -3'
miRNA:   3'- -GCGcC-GCGUCCGCG-------------AGGUCGa-CGGcc -5'
25744 5' -64.3 NC_005337.1 + 89960 0.66 0.508818
Target:  5'- gCGCGGcCGCAGcacGCGCUCgggggagCGGC-GCCGu -3'
miRNA:   3'- -GCGCC-GCGUC---CGCGAG-------GUCGaCGGCc -5'
25744 5' -64.3 NC_005337.1 + 116325 0.66 0.500503
Target:  5'- aGCGGUGCGuGCuGCUgCgGGCgcagcGCCGGg -3'
miRNA:   3'- gCGCCGCGUcCG-CGA-GgUCGa----CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 38927 0.66 0.500503
Target:  5'- -uCGGCGacucGGCGCUCCGGC-GCUa- -3'
miRNA:   3'- gcGCCGCgu--CCGCGAGGUCGaCGGcc -5'
25744 5' -64.3 NC_005337.1 + 78131 0.66 0.500503
Target:  5'- aGCGcGUGCAGGCGgUUCAcgaGCgaggcGUCGGg -3'
miRNA:   3'- gCGC-CGCGUCCGCgAGGU---CGa----CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 53028 0.66 0.500503
Target:  5'- uGCGGCuguGCGGGaGCUgCCGGCgcaacgGCCuGGu -3'
miRNA:   3'- gCGCCG---CGUCCgCGA-GGUCGa-----CGG-CC- -5'
25744 5' -64.3 NC_005337.1 + 59875 0.66 0.500503
Target:  5'- aCGaaGCGguGGCGCUgaUguGCUGCagCGGg -3'
miRNA:   3'- -GCgcCGCguCCGCGA--GguCGACG--GCC- -5'
25744 5' -64.3 NC_005337.1 + 23924 0.66 0.500503
Target:  5'- cCGCGcGCccgcgGCAGGCGCgcgCgAcGCgcccgGCCGGg -3'
miRNA:   3'- -GCGC-CG-----CGUCCGCGa--GgU-CGa----CGGCC- -5'
25744 5' -64.3 NC_005337.1 + 78980 0.66 0.500503
Target:  5'- uGCGGUGCGuGGCGCggcuguaggccCCGGUgaUGgCGGa -3'
miRNA:   3'- gCGCCGCGU-CCGCGa----------GGUCG--ACgGCC- -5'
25744 5' -64.3 NC_005337.1 + 103014 0.66 0.500503
Target:  5'- -cUGGCGCAc-CGCaUCC-GCUGCCGGa -3'
miRNA:   3'- gcGCCGCGUccGCG-AGGuCGACGGCC- -5'
25744 5' -64.3 NC_005337.1 + 55984 0.66 0.500503
Target:  5'- uCGUGGCuauGCGGGCGa-CCucGCUGgCGGg -3'
miRNA:   3'- -GCGCCG---CGUCCGCgaGGu-CGACgGCC- -5'
25744 5' -64.3 NC_005337.1 + 68194 0.66 0.500503
Target:  5'- gCGCGGCccCGGGgGCgCC-GCUGCgGGc -3'
miRNA:   3'- -GCGCCGc-GUCCgCGaGGuCGACGgCC- -5'
25744 5' -64.3 NC_005337.1 + 36742 0.66 0.500503
Target:  5'- aCGUGGUacuuguucuGCGGGCcCUCCAGgCUGCgCGc -3'
miRNA:   3'- -GCGCCG---------CGUCCGcGAGGUC-GACG-GCc -5'
25744 5' -64.3 NC_005337.1 + 52100 0.66 0.491336
Target:  5'- gGCGGCcgcguGCAGGUGCgcgacgggCCGGCcaugGCCu- -3'
miRNA:   3'- gCGCCG-----CGUCCGCGa-------GGUCGa---CGGcc -5'
25744 5' -64.3 NC_005337.1 + 107065 0.66 0.491336
Target:  5'- gGCGGCgGC-GGCGCgCCAGggggUGCCGc -3'
miRNA:   3'- gCGCCG-CGuCCGCGaGGUCg---ACGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.