miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25745 5' -58.6 NC_005337.1 + 128382 0.66 0.792958
Target:  5'- uGCGACGCGCUCcGcGUGGUCcgccuGUCc-- -3'
miRNA:   3'- -UGCUGCGCGAG-C-CACCAGac---CAGcuu -5'
25745 5' -58.6 NC_005337.1 + 88549 0.66 0.792958
Target:  5'- gACGGCGCcgucaccagcccGCUCGGUGcGgUUGGUCaGAGc -3'
miRNA:   3'- -UGCUGCG------------CGAGCCAC-CaGACCAG-CUU- -5'
25745 5' -58.6 NC_005337.1 + 115141 0.66 0.746317
Target:  5'- cACGACGCGCguggCGGaGGcCUGcGUcCGAc -3'
miRNA:   3'- -UGCUGCGCGa---GCCaCCaGAC-CA-GCUu -5'
25745 5' -58.6 NC_005337.1 + 31508 0.67 0.691204
Target:  5'- uCGACGCGCUCgaccuccggguggauGGUGGgCUGGUa--- -3'
miRNA:   3'- uGCUGCGCGAG---------------CCACCaGACCAgcuu -5'
25745 5' -58.6 NC_005337.1 + 68102 0.68 0.6569
Target:  5'- -gGACGCGg-CGGUGGUCguacucggGGUCGc- -3'
miRNA:   3'- ugCUGCGCgaGCCACCAGa-------CCAGCuu -5'
25745 5' -58.6 NC_005337.1 + 97063 0.69 0.596002
Target:  5'- cACGcACGCGCggcgcgCGGUGGUCUGcGUg--- -3'
miRNA:   3'- -UGC-UGCGCGa-----GCCACCAGAC-CAgcuu -5'
25745 5' -58.6 NC_005337.1 + 4507 0.69 0.596002
Target:  5'- aGCGGCGUGUUCccgaacacguuGGUGGUCauggGGUCGc- -3'
miRNA:   3'- -UGCUGCGCGAG-----------CCACCAGa---CCAGCuu -5'
25745 5' -58.6 NC_005337.1 + 91213 0.72 0.432598
Target:  5'- -gGGCGCGCcgcCGGUGGUCagcgcguccaugUGGUCGGc -3'
miRNA:   3'- ugCUGCGCGa--GCCACCAG------------ACCAGCUu -5'
25745 5' -58.6 NC_005337.1 + 42144 0.73 0.397944
Target:  5'- cGCGGCGCGUcCGG-GGUCUGGaaGAGc -3'
miRNA:   3'- -UGCUGCGCGaGCCaCCAGACCagCUU- -5'
25745 5' -58.6 NC_005337.1 + 123770 0.73 0.388732
Target:  5'- aACGugGcCGCguuucccUCGGUGGUCUGGaCGGg -3'
miRNA:   3'- -UGCugC-GCG-------AGCCACCAGACCaGCUu -5'
25745 5' -58.6 NC_005337.1 + 2193 1.05 0.002451
Target:  5'- cACGACGCGCUCGGUGGUCUGGUCGAAg -3'
miRNA:   3'- -UGCUGCGCGAGCCACCAGACCAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.