Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25746 | 5' | -57.9 | NC_005337.1 | + | 2122 | 0.67 | 0.719994 |
Target: 5'- cACGCGUGCAGCGGcGUUCUGu----- -3' miRNA: 3'- -UGCGCACGUCGUCcCAGGACcacuuc -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 3701 | 1.07 | 0.002012 |
Target: 5'- cACGCGUGCAGCAGGGUCCUGGUGAAGc -3' miRNA: 3'- -UGCGCACGUCGUCCCAGGACCACUUC- -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 4039 | 0.69 | 0.638742 |
Target: 5'- uACGCGUGCAGCGGcGUCUUGucGAGc -3' miRNA: 3'- -UGCGCACGUCGUCcCAGGACcaCUUc -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 4597 | 0.66 | 0.777996 |
Target: 5'- uGCGCGUGCugguGCAGGaGcguguUCCUGcaGAAGu -3' miRNA: 3'- -UGCGCACGu---CGUCC-C-----AGGACcaCUUC- -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 5595 | 0.66 | 0.787257 |
Target: 5'- cGCGCGUGCccGGCGGGGgacgagcgUCUcGGUGc-- -3' miRNA: 3'- -UGCGCACG--UCGUCCCa-------GGA-CCACuuc -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 8286 | 0.69 | 0.60795 |
Target: 5'- cGCGaCGUGCAGCGGGGUCUg------- -3' miRNA: 3'- -UGC-GCACGUCGUCCCAGGaccacuuc -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 10483 | 0.67 | 0.749462 |
Target: 5'- gACGCGUGUAggacGCGGGGUCCUu------ -3' miRNA: 3'- -UGCGCACGU----CGUCCCAGGAccacuuc -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 23072 | 0.66 | 0.777996 |
Target: 5'- uCGUGgGCGGCucGGGGUCC-GG-GAAGa -3' miRNA: 3'- uGCGCaCGUCG--UCCCAGGaCCaCUUC- -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 46277 | 0.75 | 0.303315 |
Target: 5'- uGCGCGUGCAGCagcucaaGGGGUaCCUGGg---- -3' miRNA: 3'- -UGCGCACGUCG-------UCCCA-GGACCacuuc -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 51536 | 0.66 | 0.768604 |
Target: 5'- -gGCGUGCGGCugccGGG-CCUGGa---- -3' miRNA: 3'- ugCGCACGUCGu---CCCaGGACCacuuc -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 67524 | 0.72 | 0.459902 |
Target: 5'- cGCGCGUGCGGCGG----UUGGUGAAGu -3' miRNA: 3'- -UGCGCACGUCGUCccagGACCACUUC- -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 68671 | 0.67 | 0.710007 |
Target: 5'- aGCGCGUGCAGCAGcGcGcUCUUGGc---- -3' miRNA: 3'- -UGCGCACGUCGUC-C-C-AGGACCacuuc -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 79336 | 0.69 | 0.618206 |
Target: 5'- uCGCG-GUagaagagguuGGCGGGGUCCUGGUa--- -3' miRNA: 3'- uGCGCaCG----------UCGUCCCAGGACCAcuuc -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 81459 | 0.69 | 0.628472 |
Target: 5'- aGCGCGUagucgcGCAGCA-GGUCCgccgUGGUGGGc -3' miRNA: 3'- -UGCGCA------CGUCGUcCCAGG----ACCACUUc -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 84230 | 0.69 | 0.597712 |
Target: 5'- gGCGCG-GCcuGCGGGcaCUUGGUGAAGa -3' miRNA: 3'- -UGCGCaCGu-CGUCCcaGGACCACUUC- -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 97330 | 0.69 | 0.618206 |
Target: 5'- -gGCG-GUGGCGcGGuUCCUGGUGAAGu -3' miRNA: 3'- ugCGCaCGUCGUcCC-AGGACCACUUC- -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 97805 | 0.68 | 0.689844 |
Target: 5'- gGC-CGUGCGGCAGG----UGGUGAAGa -3' miRNA: 3'- -UGcGCACGUCGUCCcaggACCACUUC- -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 101129 | 0.67 | 0.710007 |
Target: 5'- aGCGCG-GCuGCGcGGaCCUGGUGGAc -3' miRNA: 3'- -UGCGCaCGuCGUcCCaGGACCACUUc -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 111424 | 0.67 | 0.710007 |
Target: 5'- aGCGCGccGCgguccagcacgAGCGGGucGUCCUcGGUGAGGa -3' miRNA: 3'- -UGCGCa-CG-----------UCGUCC--CAGGA-CCACUUC- -5' |
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25746 | 5' | -57.9 | NC_005337.1 | + | 111542 | 0.67 | 0.739731 |
Target: 5'- cCGCGUGCAGguCGGGGUCggcGGUGccGu -3' miRNA: 3'- uGCGCACGUC--GUCCCAGga-CCACuuC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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