miRNA display CGI


Results 21 - 40 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25747 3' -55.2 NC_005337.1 + 118359 0.66 0.90613
Target:  5'- cCGUCUUCGGUcGCucugCCUC-CgGCGCc -3'
miRNA:   3'- -GUAGAAGUCGuCGca--GGAGuGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 78908 0.66 0.899735
Target:  5'- --aCUUCAcGgAGCGcUCCUCGaagagCGCGCg -3'
miRNA:   3'- guaGAAGU-CgUCGC-AGGAGUg----GCGCG- -5'
25747 3' -55.2 NC_005337.1 + 117523 0.66 0.899735
Target:  5'- ----aUCAGcCGGCGcgCCgUgACCGCGCa -3'
miRNA:   3'- guagaAGUC-GUCGCa-GG-AgUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 512 0.66 0.899735
Target:  5'- ----aUCAG-AGC-UCCUCGCgGCGCa -3'
miRNA:   3'- guagaAGUCgUCGcAGGAGUGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 29140 0.66 0.899735
Target:  5'- cCAUg-UCGGCgacGGcCGUCCggagCGCCGCGUc -3'
miRNA:   3'- -GUAgaAGUCG---UC-GCAGGa---GUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 29585 0.66 0.899735
Target:  5'- -cUCcUCGGCGGUGUCCgaCGCgGaCGCc -3'
miRNA:   3'- guAGaAGUCGUCGCAGGa-GUGgC-GCG- -5'
25747 3' -55.2 NC_005337.1 + 512 0.66 0.899735
Target:  5'- ----aUCAG-AGC-UCCUCGCgGCGCa -3'
miRNA:   3'- guagaAGUCgUCGcAGGAGUGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 70884 0.66 0.899735
Target:  5'- uCAUCgcCAGCAGCGgcgCCUCcggaaGCCaCGUc -3'
miRNA:   3'- -GUAGaaGUCGUCGCa--GGAG-----UGGcGCG- -5'
25747 3' -55.2 NC_005337.1 + 37871 0.66 0.899735
Target:  5'- gGUCUUCuGCGccaccuCGUCCUCcGCCGCcuGCu -3'
miRNA:   3'- gUAGAAGuCGUc-----GCAGGAG-UGGCG--CG- -5'
25747 3' -55.2 NC_005337.1 + 34745 0.66 0.899735
Target:  5'- ----gUCGGCGGCGcaCCggGCCGCGUc -3'
miRNA:   3'- guagaAGUCGUCGCa-GGagUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 11859 0.66 0.899735
Target:  5'- gCAUCggcgCGGacaGGCG-CCgcgcgcCGCCGCGCa -3'
miRNA:   3'- -GUAGaa--GUCg--UCGCaGGa-----GUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 59570 0.66 0.899082
Target:  5'- gCAUCUggUC-GCGGCGgaugccggucuccUCCUCGaccUCGCGCg -3'
miRNA:   3'- -GUAGA--AGuCGUCGC-------------AGGAGU---GGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 51623 0.66 0.897769
Target:  5'- -uUCUUCGGCgacgagcugcggucGGCGcUCCgcggUCGCCaGCGCc -3'
miRNA:   3'- guAGAAGUCG--------------UCGC-AGG----AGUGG-CGCG- -5'
25747 3' -55.2 NC_005337.1 + 133939 0.66 0.8931
Target:  5'- -cUCgagUCAGCccguccguGCGUCCgugCGuCCGUGCg -3'
miRNA:   3'- guAGa--AGUCGu-------CGCAGGa--GU-GGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 4292 0.66 0.8931
Target:  5'- uGUUggcCAGCGGCGUCCU-GCCgGUGUu -3'
miRNA:   3'- gUAGaa-GUCGUCGCAGGAgUGG-CGCG- -5'
25747 3' -55.2 NC_005337.1 + 1199 0.66 0.8931
Target:  5'- gCAUCca-GGCGGCcaCCggCGCCGCGUa -3'
miRNA:   3'- -GUAGaagUCGUCGcaGGa-GUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 6278 0.66 0.8931
Target:  5'- aCGUC--CAGCAGCGUCgUguCgGCGUu -3'
miRNA:   3'- -GUAGaaGUCGUCGCAGgAguGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 101714 0.66 0.8931
Target:  5'- uCAUCa--AGCAcCGgcucaaggacaUCCUCACCGUGCg -3'
miRNA:   3'- -GUAGaagUCGUcGC-----------AGGAGUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 103491 0.66 0.8931
Target:  5'- --gCUUCAGCAaCGUCUgcgacuCCGUGCa -3'
miRNA:   3'- guaGAAGUCGUcGCAGGagu---GGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 21748 0.66 0.8931
Target:  5'- uCGUCUUCGugcacaugucGCAGCGcugcgaggUCUUCgacGCCGUGCu -3'
miRNA:   3'- -GUAGAAGU----------CGUCGC--------AGGAG---UGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.