Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25747 | 5' | -55.5 | NC_005337.1 | + | 79609 | 0.68 | 0.776954 |
Target: 5'- uCGCGCGaGcgcaggagcccgcaGCGGAuGCAGAGGUGGUUg -3' miRNA: 3'- uGCGCGC-C--------------UGUCUcCGUCUUCAUCAA- -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 68638 | 0.68 | 0.770226 |
Target: 5'- -aGCGUGGcGgAGGGGCGGAucuuggGGUGGUUg -3' miRNA: 3'- ugCGCGCC-UgUCUCCGUCU------UCAUCAA- -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 49932 | 0.68 | 0.769259 |
Target: 5'- aGCGCGgGGACAGcacgaccAGGCuGGAGGUGu-- -3' miRNA: 3'- -UGCGCgCCUGUC-------UCCG-UCUUCAUcaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 115144 | 0.68 | 0.760504 |
Target: 5'- gACGCGCGuGGCGGAGGCcugcguccgacAGAAGc---- -3' miRNA: 3'- -UGCGCGC-CUGUCUCCG-----------UCUUCaucaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 122462 | 0.68 | 0.760504 |
Target: 5'- uCGCGCaGuGC-GAGGCAGAGGUGGc- -3' miRNA: 3'- uGCGCGcC-UGuCUCCGUCUUCAUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 71868 | 0.69 | 0.710294 |
Target: 5'- gACGCcaCGGGC-GAGGCGGcGGUGGUg -3' miRNA: 3'- -UGCGc-GCCUGuCUCCGUCuUCAUCAa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 81827 | 0.69 | 0.700003 |
Target: 5'- -aGCGCGGACAGGGGUc---GUAGa- -3' miRNA: 3'- ugCGCGCCUGUCUCCGucuuCAUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 88944 | 0.7 | 0.68965 |
Target: 5'- aGCuCGCGGACcgcgcGGAGGCGGAGGgcGc- -3' miRNA: 3'- -UGcGCGCCUG-----UCUCCGUCUUCauCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 60226 | 0.7 | 0.679248 |
Target: 5'- gGCGCGgGGGCuGGGGCuGggGUcGGa- -3' miRNA: 3'- -UGCGCgCCUGuCUCCGuCuuCA-UCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 31282 | 0.7 | 0.636271 |
Target: 5'- cGCGCuCGGGCacguccgAGGGGCAGAAGUAc-- -3' miRNA: 3'- -UGCGcGCCUG-------UCUCCGUCUUCAUcaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 20015 | 0.71 | 0.626808 |
Target: 5'- uGCGgGCGGA-AGAGGUGGAGGUAcGUc -3' miRNA: 3'- -UGCgCGCCUgUCUCCGUCUUCAU-CAa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 133464 | 0.71 | 0.626808 |
Target: 5'- cGCGCGCGGACGGcuccGCGGAGcUGGUc -3' miRNA: 3'- -UGCGCGCCUGUCuc--CGUCUUcAUCAa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 67524 | 0.71 | 0.626808 |
Target: 5'- cGCGCGUGcGGCGGuuGguGAAGUAGg- -3' miRNA: 3'- -UGCGCGC-CUGUCucCguCUUCAUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 133464 | 0.71 | 0.626808 |
Target: 5'- cGCGCGCGGACGGcuccGCGGAGcUGGUc -3' miRNA: 3'- -UGCGCGCCUGUCuc--CGUCUUcAUCAa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 66626 | 0.71 | 0.616297 |
Target: 5'- aACGCcuuuCGGGCGGGcGGUGGGAGUGGUg -3' miRNA: 3'- -UGCGc---GCCUGUCU-CCGUCUUCAUCAa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 29086 | 0.71 | 0.592185 |
Target: 5'- cGCGCGCGGaaaagguaggaaucGCAGAGGCugccgGGuAAGUAGg- -3' miRNA: 3'- -UGCGCGCC--------------UGUCUCCG-----UC-UUCAUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 110375 | 0.72 | 0.543512 |
Target: 5'- gGCGCGCGG-CAGcgacAGGCGGAGG-AGg- -3' miRNA: 3'- -UGCGCGCCuGUC----UCCGUCUUCaUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 133724 | 0.73 | 0.513127 |
Target: 5'- uACGCGCGG-CGGuGGCGG-AGUGGc- -3' miRNA: 3'- -UGCGCGCCuGUCuCCGUCuUCAUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 133724 | 0.73 | 0.513127 |
Target: 5'- uACGCGCGG-CGGuGGCGG-AGUGGc- -3' miRNA: 3'- -UGCGCGCCuGUCuCCGUCuUCAUCaa -5' |
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25747 | 5' | -55.5 | NC_005337.1 | + | 19706 | 0.73 | 0.513127 |
Target: 5'- gUGUGCGGGCGGGGGCGGuAAGUc--- -3' miRNA: 3'- uGCGCGCCUGUCUCCGUC-UUCAucaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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