miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25748 3' -58.5 NC_005337.1 + 10381 0.66 0.792958
Target:  5'- aGGCGGCcacgcagcugGUGCUCGGgCuGuGGAgGUGc -3'
miRNA:   3'- gCCGCUG----------UACGAGCCgGuC-CCUgUAC- -5'
25748 3' -58.5 NC_005337.1 + 13853 0.66 0.783881
Target:  5'- gGGCGugA-GCUCcGCCuccGGGACGg- -3'
miRNA:   3'- gCCGCugUaCGAGcCGGu--CCCUGUac -5'
25748 3' -58.5 NC_005337.1 + 57604 0.66 0.783881
Target:  5'- gCGGUGuACGUGCUCaaGCaccuccGGGACGUGu -3'
miRNA:   3'- -GCCGC-UGUACGAGc-CGgu----CCCUGUAC- -5'
25748 3' -58.5 NC_005337.1 + 53671 0.66 0.778369
Target:  5'- -cGCGGCGUGCUCGcuggacccuugaagcGCCGGGcGCGUc -3'
miRNA:   3'- gcCGCUGUACGAGC---------------CGGUCCcUGUAc -5'
25748 3' -58.5 NC_005337.1 + 55327 0.66 0.774669
Target:  5'- aCGaGCGugGUGCacUCGGUgaacauCGGGGACGc- -3'
miRNA:   3'- -GC-CGCugUACG--AGCCG------GUCCCUGUac -5'
25748 3' -58.5 NC_005337.1 + 9414 0.66 0.774669
Target:  5'- aGGCGGCAUGCgau-CCAcGaGGACGUGu -3'
miRNA:   3'- gCCGCUGUACGagccGGU-C-CCUGUAC- -5'
25748 3' -58.5 NC_005337.1 + 78295 0.66 0.765332
Target:  5'- uGGCGcCGUaCUCcaGGCUGGGGAgGUGg -3'
miRNA:   3'- gCCGCuGUAcGAG--CCGGUCCCUgUAC- -5'
25748 3' -58.5 NC_005337.1 + 122004 0.66 0.755878
Target:  5'- gCGcGCGGgGUGCgaccCGGCCGcgacGGACAUGc -3'
miRNA:   3'- -GC-CGCUgUACGa---GCCGGUc---CCUGUAC- -5'
25748 3' -58.5 NC_005337.1 + 23549 0.66 0.755878
Target:  5'- uGGCcauCAUGCggUCGGCCGGGaGCAg- -3'
miRNA:   3'- gCCGcu-GUACG--AGCCGGUCCcUGUac -5'
25748 3' -58.5 NC_005337.1 + 922 0.67 0.746317
Target:  5'- gCGGCGGCGgcgGCgaggCGGCgGagcGcGGACAUGc -3'
miRNA:   3'- -GCCGCUGUa--CGa---GCCGgU---C-CCUGUAC- -5'
25748 3' -58.5 NC_005337.1 + 922 0.67 0.746317
Target:  5'- gCGGCGGCGgcgGCgaggCGGCgGagcGcGGACAUGc -3'
miRNA:   3'- -GCCGCUGUa--CGa---GCCGgU---C-CCUGUAC- -5'
25748 3' -58.5 NC_005337.1 + 107064 0.67 0.726906
Target:  5'- uGGCGGCG-GCggCGcGCCAGGGGg--- -3'
miRNA:   3'- gCCGCUGUaCGa-GC-CGGUCCCUguac -5'
25748 3' -58.5 NC_005337.1 + 69550 0.67 0.726906
Target:  5'- cCGGCGcGCGggcUGCUCGGCgCGGaGGugGc- -3'
miRNA:   3'- -GCCGC-UGU---ACGAGCCG-GUC-CCugUac -5'
25748 3' -58.5 NC_005337.1 + 9310 0.67 0.726906
Target:  5'- cCGGCGAggaaCAUGCcgagacCGGCgAcgcGGGACAUGc -3'
miRNA:   3'- -GCCGCU----GUACGa-----GCCGgU---CCCUGUAC- -5'
25748 3' -58.5 NC_005337.1 + 12695 0.67 0.726906
Target:  5'- cCGGCGcGCguacaugcgGUGCUCGGCgaAGGcGACGUa -3'
miRNA:   3'- -GCCGC-UG---------UACGAGCCGg-UCC-CUGUAc -5'
25748 3' -58.5 NC_005337.1 + 127244 0.67 0.717076
Target:  5'- --cCGACGUGCUCGGCCugaugcuGGaGGCGg- -3'
miRNA:   3'- gccGCUGUACGAGCCGGu------CC-CUGUac -5'
25748 3' -58.5 NC_005337.1 + 91088 0.67 0.717076
Target:  5'- gCGGUGAcCGUGCUCGGgauGGG-CGUGu -3'
miRNA:   3'- -GCCGCU-GUACGAGCCgguCCCuGUAC- -5'
25748 3' -58.5 NC_005337.1 + 110840 0.67 0.707174
Target:  5'- gGuGCGugAUGCUCGcGCgcccguugaCGGGGAUGUGc -3'
miRNA:   3'- gC-CGCugUACGAGC-CG---------GUCCCUGUAC- -5'
25748 3' -58.5 NC_005337.1 + 117159 0.67 0.707174
Target:  5'- aCGGCGGCGaGUUCuGCCGGGcGCAc- -3'
miRNA:   3'- -GCCGCUGUaCGAGcCGGUCCcUGUac -5'
25748 3' -58.5 NC_005337.1 + 106238 0.67 0.707174
Target:  5'- gCGGCGgucGCGUGC-CGGCggcaggcgaugCAGGGcaGCGUGg -3'
miRNA:   3'- -GCCGC---UGUACGaGCCG-----------GUCCC--UGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.