miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25748 3' -58.5 NC_005337.1 + 6131 1.07 0.00186
Target:  5'- cCGGCGACAUGCUCGGCCAGGGACAUGc -3'
miRNA:   3'- -GCCGCUGUACGAGCCGGUCCCUGUAC- -5'
25748 3' -58.5 NC_005337.1 + 31911 0.77 0.224579
Target:  5'- gCGGUGGCcagGUGCgCGGCCucGGGGGCAUGu -3'
miRNA:   3'- -GCCGCUG---UACGaGCCGG--UCCCUGUAC- -5'
25748 3' -58.5 NC_005337.1 + 110027 0.76 0.243759
Target:  5'- aGGCGAacuCGUGCUugaugagcgaggccaCGGCCGGGGGCAg- -3'
miRNA:   3'- gCCGCU---GUACGA---------------GCCGGUCCCUGUac -5'
25748 3' -58.5 NC_005337.1 + 11329 0.75 0.291542
Target:  5'- uGGCGGCGUcGUcgCGGCCGGGGAUg-- -3'
miRNA:   3'- gCCGCUGUA-CGa-GCCGGUCCCUGuac -5'
25748 3' -58.5 NC_005337.1 + 83914 0.74 0.316619
Target:  5'- gGGCGGCGccugcuggcccagGCUCGGCCGGGcGGCGg- -3'
miRNA:   3'- gCCGCUGUa------------CGAGCCGGUCC-CUGUac -5'
25748 3' -58.5 NC_005337.1 + 88073 0.73 0.365124
Target:  5'- uCGGCGAgcuCAUGCa-GGCCGuGGACAUGg -3'
miRNA:   3'- -GCCGCU---GUACGagCCGGUcCCUGUAC- -5'
25748 3' -58.5 NC_005337.1 + 11531 0.72 0.432598
Target:  5'- gCGGuCGGCGUGC-CGGaucacgggcaCCAGGGACAg- -3'
miRNA:   3'- -GCC-GCUGUACGaGCC----------GGUCCCUGUac -5'
25748 3' -58.5 NC_005337.1 + 118518 0.71 0.459711
Target:  5'- cCGGCGuCGUGUcggcggaugccaUCGGCCAGGacACGUGg -3'
miRNA:   3'- -GCCGCuGUACG------------AGCCGGUCCc-UGUAC- -5'
25748 3' -58.5 NC_005337.1 + 117837 0.71 0.468948
Target:  5'- gGGCGGgGUGCgcacgcaggCGGUgGGGGACAa- -3'
miRNA:   3'- gCCGCUgUACGa--------GCCGgUCCCUGUac -5'
25748 3' -58.5 NC_005337.1 + 56985 0.71 0.468948
Target:  5'- aGGCcauCGUGUUCGGCCAcGGGuuCGUGg -3'
miRNA:   3'- gCCGcu-GUACGAGCCGGU-CCCu-GUAC- -5'
25748 3' -58.5 NC_005337.1 + 117342 0.71 0.497208
Target:  5'- uGGCGACG-GCcaacgUCGGCCGcGuGGACGUGc -3'
miRNA:   3'- gCCGCUGUaCG-----AGCCGGU-C-CCUGUAC- -5'
25748 3' -58.5 NC_005337.1 + 58048 0.7 0.513559
Target:  5'- aCGGCGGCGUGCUCG-CCAaccccgaggaccucGuGGACAa- -3'
miRNA:   3'- -GCCGCUGUACGAGCcGGU--------------C-CCUGUac -5'
25748 3' -58.5 NC_005337.1 + 42530 0.7 0.526209
Target:  5'- aGGCGcACGcGCgcgUGGCCGGGGGCu-- -3'
miRNA:   3'- gCCGC-UGUaCGa--GCCGGUCCCUGuac -5'
25748 3' -58.5 NC_005337.1 + 42914 0.7 0.536019
Target:  5'- gGGCuccGGCGUGCUgcuccgCGcGCuCAGGGACAUGu -3'
miRNA:   3'- gCCG---CUGUACGA------GC-CG-GUCCCUGUAC- -5'
25748 3' -58.5 NC_005337.1 + 24503 0.7 0.554827
Target:  5'- gCGGCGACGcGCUCGagcccgugcccaaGCCGGcGGAgAUGc -3'
miRNA:   3'- -GCCGCUGUaCGAGC-------------CGGUC-CCUgUAC- -5'
25748 3' -58.5 NC_005337.1 + 82051 0.7 0.555822
Target:  5'- uGGCGuCGaGCgCGGCCAcgucccGGGGCGUGa -3'
miRNA:   3'- gCCGCuGUaCGaGCCGGU------CCCUGUAC- -5'
25748 3' -58.5 NC_005337.1 + 24395 0.69 0.575833
Target:  5'- uGGCgGACGUGCUCgaccggaaGGCCGGGcuguGCGUGc -3'
miRNA:   3'- gCCG-CUGUACGAG--------CCGGUCCc---UGUAC- -5'
25748 3' -58.5 NC_005337.1 + 5593 0.69 0.585901
Target:  5'- -aGCGcGCGUGCcCGGCgGGGGACGa- -3'
miRNA:   3'- gcCGC-UGUACGaGCCGgUCCCUGUac -5'
25748 3' -58.5 NC_005337.1 + 121837 0.69 0.596002
Target:  5'- cCGGcCGACGUGCUCGugaaGUCGGuGGGCGc- -3'
miRNA:   3'- -GCC-GCUGUACGAGC----CGGUC-CCUGUac -5'
25748 3' -58.5 NC_005337.1 + 77466 0.69 0.596002
Target:  5'- uGGUGGCGUGCgCGGCgacgcguccCGGGGcgguGCAUGg -3'
miRNA:   3'- gCCGCUGUACGaGCCG---------GUCCC----UGUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.