miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25748 5' -53.3 NC_005337.1 + 56296 0.66 0.953953
Target:  5'- cGUCAUGCGG-CCgcUGCuCGaGAucucgcagGAGCGCu -3'
miRNA:   3'- -UAGUACGUCuGGa-ACG-GC-CU--------UUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 78526 0.66 0.953541
Target:  5'- cUCGuUGCAGACCacgaccaucUGCCGGGGcacguacAGCaGCg -3'
miRNA:   3'- uAGU-ACGUCUGGa--------ACGGCCUU-------UCG-CG- -5'
25748 5' -53.3 NC_005337.1 + 66931 0.66 0.949281
Target:  5'- -cCAUGguGGCCacggacCCGGAcgcgcgcgcgaucGAGCGCg -3'
miRNA:   3'- uaGUACguCUGGaac---GGCCU-------------UUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 103210 0.66 0.949281
Target:  5'- gAUCGUGgAcGCCUucgUGCUGGAcaugcgucgccgcAAGCGCc -3'
miRNA:   3'- -UAGUACgUcUGGA---ACGGCCU-------------UUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 102170 0.66 0.947954
Target:  5'- -aCAUGCGcGCCgccauguacaacgUGCUGGAGAcgcuGCGCa -3'
miRNA:   3'- uaGUACGUcUGGa------------ACGGCCUUU----CGCG- -5'
25748 5' -53.3 NC_005337.1 + 131506 0.66 0.943365
Target:  5'- uUCcUGCAGAucgcgcugcuguaCCUcaagaucuacgagaUGCCGGGGuGCGCg -3'
miRNA:   3'- uAGuACGUCU-------------GGA--------------ACGGCCUUuCGCG- -5'
25748 5' -53.3 NC_005337.1 + 76011 0.66 0.942417
Target:  5'- -cCGUGCgccgguacacgcggaAGACCgccgcGCCGGAcuuGCGCu -3'
miRNA:   3'- uaGUACG---------------UCUGGaa---CGGCCUuu-CGCG- -5'
25748 5' -53.3 NC_005337.1 + 118180 0.66 0.942417
Target:  5'- ----gGCGGACCcguucgagcucgcGCCGGugGGCGCg -3'
miRNA:   3'- uaguaCGUCUGGaa-----------CGGCCuuUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 22652 0.66 0.94049
Target:  5'- uUCGgcGCGGACgCgcgGCUGcGGGAGCGCu -3'
miRNA:   3'- uAGUa-CGUCUG-Gaa-CGGC-CUUUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 36186 0.66 0.940001
Target:  5'- cGUCGUcGCAGACCacgUGCaucuccgagaccaCGGGcauGAGCGUg -3'
miRNA:   3'- -UAGUA-CGUCUGGa--ACG-------------GCCU---UUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 96483 0.66 0.937521
Target:  5'- uUCcgGCgGGGCCUgGCCuGGGAacgauaggcaggggaGGCGCg -3'
miRNA:   3'- uAGuaCG-UCUGGAaCGG-CCUU---------------UCGCG- -5'
25748 5' -53.3 NC_005337.1 + 84848 0.66 0.935491
Target:  5'- -aCAUGaCGGACCU--CUGGAAgucucaggGGCGCa -3'
miRNA:   3'- uaGUAC-GUCUGGAacGGCCUU--------UCGCG- -5'
25748 5' -53.3 NC_005337.1 + 57644 0.66 0.935491
Target:  5'- uUCAUGCuGGugC-UGCCGG---GCGCc -3'
miRNA:   3'- uAGUACG-UCugGaACGGCCuuuCGCG- -5'
25748 5' -53.3 NC_005337.1 + 18618 0.66 0.935491
Target:  5'- uAUC-UGCAggauGACgUUGCCGGAGggguGGUGUg -3'
miRNA:   3'- -UAGuACGU----CUGgAACGGCCUU----UCGCG- -5'
25748 5' -53.3 NC_005337.1 + 8981 0.66 0.935491
Target:  5'- cGUCAUGaaccgcACCUccuccgUGCCGGGGcugcAGCGCa -3'
miRNA:   3'- -UAGUACguc---UGGA------ACGGCCUU----UCGCG- -5'
25748 5' -53.3 NC_005337.1 + 81571 0.66 0.935491
Target:  5'- -gCAgGUAGGCCUcGuCCGcGAAGCGCg -3'
miRNA:   3'- uaGUaCGUCUGGAaC-GGCcUUUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 33503 0.66 0.932368
Target:  5'- cUCGUGCAuucGCUugUUGCagcggucgaucgcggCGGAGAGCGCg -3'
miRNA:   3'- uAGUACGUc--UGG--AACG---------------GCCUUUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 6242 0.66 0.930234
Target:  5'- -aCGUGCAcGGCCUUgGCCGacucgucuGCGCg -3'
miRNA:   3'- uaGUACGU-CUGGAA-CGGCcuuu----CGCG- -5'
25748 5' -53.3 NC_005337.1 + 110740 0.66 0.930234
Target:  5'- ----gGCAGGCCccGCCGGGGucCGCg -3'
miRNA:   3'- uaguaCGUCUGGaaCGGCCUUucGCG- -5'
25748 5' -53.3 NC_005337.1 + 93266 0.66 0.930234
Target:  5'- uUUAUGguGGCgagGCCGGggGuGCGUc -3'
miRNA:   3'- uAGUACguCUGgaaCGGCCuuU-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.