miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25748 5' -53.3 NC_005337.1 + 119416 0.66 0.930234
Target:  5'- uUCGUGguGAgCgaGgUGGAuAGCGCg -3'
miRNA:   3'- uAGUACguCUgGaaCgGCCUuUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 57702 0.66 0.930234
Target:  5'- cAUgAUGCAGuuCgcGCCGGAGguGGUGCc -3'
miRNA:   3'- -UAgUACGUCugGaaCGGCCUU--UCGCG- -5'
25748 5' -53.3 NC_005337.1 + 8634 0.66 0.930234
Target:  5'- -gCAUGUAccacucGCCgUGCCGGAGcuucAGCGCc -3'
miRNA:   3'- uaGUACGUc-----UGGaACGGCCUU----UCGCG- -5'
25748 5' -53.3 NC_005337.1 + 6242 0.66 0.930234
Target:  5'- -aCGUGCAcGGCCUUgGCCGacucgucuGCGCg -3'
miRNA:   3'- uaGUACGU-CUGGAA-CGGCcuuu----CGCG- -5'
25748 5' -53.3 NC_005337.1 + 93266 0.66 0.930234
Target:  5'- uUUAUGguGGCgagGCCGGggGuGCGUc -3'
miRNA:   3'- uAGUACguCUGgaaCGGCCuuU-CGCG- -5'
25748 5' -53.3 NC_005337.1 + 9546 0.66 0.929151
Target:  5'- uUCAaGUAGugCUgaaaugagggugGCCGGAAuGUGCg -3'
miRNA:   3'- uAGUaCGUCugGAa-----------CGGCCUUuCGCG- -5'
25748 5' -53.3 NC_005337.1 + 15689 0.66 0.928606
Target:  5'- ----cGgAGGCCUugaacagcacgacgUGCCGGAcgucgugcGAGCGCg -3'
miRNA:   3'- uaguaCgUCUGGA--------------ACGGCCU--------UUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 48076 0.67 0.924716
Target:  5'- -cCGUGCAGAgC---CCGGAguucAAGCGCg -3'
miRNA:   3'- uaGUACGUCUgGaacGGCCU----UUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 85449 0.67 0.924716
Target:  5'- ----aGCuucuCCUUGUCGGAGAGCaGCg -3'
miRNA:   3'- uaguaCGucu-GGAACGGCCUUUCG-CG- -5'
25748 5' -53.3 NC_005337.1 + 48379 0.67 0.924716
Target:  5'- -cCAUGguGcCCaUGCUGGAGGGCu- -3'
miRNA:   3'- uaGUACguCuGGaACGGCCUUUCGcg -5'
25748 5' -53.3 NC_005337.1 + 30457 0.67 0.924716
Target:  5'- uUCAUGC---CCUUGaaGGAcauGAGCGCg -3'
miRNA:   3'- uAGUACGucuGGAACggCCU---UUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 123280 0.67 0.92415
Target:  5'- -aCAUGguGACCguguccgUGCCgcacgcgcugcgcGGAucGCGCc -3'
miRNA:   3'- uaGUACguCUGGa------ACGG-------------CCUuuCGCG- -5'
25748 5' -53.3 NC_005337.1 + 90490 0.67 0.918939
Target:  5'- ----aGCAGACCUUgGUCaGGAu-GCGCg -3'
miRNA:   3'- uaguaCGUCUGGAA-CGG-CCUuuCGCG- -5'
25748 5' -53.3 NC_005337.1 + 76743 0.67 0.918939
Target:  5'- -gCAUGCGGuCCagGCCcaGGAAGacGCGCg -3'
miRNA:   3'- uaGUACGUCuGGaaCGG--CCUUU--CGCG- -5'
25748 5' -53.3 NC_005337.1 + 99582 0.67 0.918939
Target:  5'- cUCGUGCGGcGCUUcggGCgGGAcuGCGCc -3'
miRNA:   3'- uAGUACGUC-UGGAa--CGgCCUuuCGCG- -5'
25748 5' -53.3 NC_005337.1 + 24442 0.67 0.918939
Target:  5'- uUCGcGCAGACCgccGCCGGgcAGUa- -3'
miRNA:   3'- uAGUaCGUCUGGaa-CGGCCuuUCGcg -5'
25748 5' -53.3 NC_005337.1 + 51537 0.67 0.918939
Target:  5'- -gCGUGCGGcuGCCggGCCuGGAGGcCGCg -3'
miRNA:   3'- uaGUACGUC--UGGaaCGGcCUUUC-GCG- -5'
25748 5' -53.3 NC_005337.1 + 110034 0.67 0.915349
Target:  5'- cUCGUGCuugaugagcgAGGCCacgGCCGGggGcagcuccaccucgacGCGCg -3'
miRNA:   3'- uAGUACG----------UCUGGaa-CGGCCuuU---------------CGCG- -5'
25748 5' -53.3 NC_005337.1 + 87017 0.67 0.912903
Target:  5'- --gAUGgGGAUCUUGaaGGAGaAGCGCu -3'
miRNA:   3'- uagUACgUCUGGAACggCCUU-UCGCG- -5'
25748 5' -53.3 NC_005337.1 + 108510 0.67 0.912903
Target:  5'- gAUCAUGUaccuGGAgCgcacGCUGGAcGGCGCg -3'
miRNA:   3'- -UAGUACG----UCUgGaa--CGGCCUuUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.