miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25748 5' -53.3 NC_005337.1 + 83367 0.69 0.847414
Target:  5'- ---cUGCGGACCg-GCCGcuGGGCGCg -3'
miRNA:   3'- uaguACGUCUGGaaCGGCcuUUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 91712 0.7 0.793977
Target:  5'- uUCAccUGCAGGCCg-GUgGGguAGCGCa -3'
miRNA:   3'- uAGU--ACGUCUGGaaCGgCCuuUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 118228 0.7 0.793977
Target:  5'- cAUCAUGCAGugCgcggaGCCcgaGGAGAcgccGCGCa -3'
miRNA:   3'- -UAGUACGUCugGaa---CGG---CCUUU----CGCG- -5'
25748 5' -53.3 NC_005337.1 + 88777 0.7 0.793977
Target:  5'- -aCGUGgAGGCCUUcgacgugcGuCCGGAGAGCGg -3'
miRNA:   3'- uaGUACgUCUGGAA--------C-GGCCUUUCGCg -5'
25748 5' -53.3 NC_005337.1 + 117234 0.7 0.793977
Target:  5'- -aCGUGCAGACC--GCgCGGAAcgcgacgcAGUGCg -3'
miRNA:   3'- uaGUACGUCUGGaaCG-GCCUU--------UCGCG- -5'
25748 5' -53.3 NC_005337.1 + 120776 0.7 0.803335
Target:  5'- cAUCcgGguGACCgggaugcaGCUGGAGcGGCGCg -3'
miRNA:   3'- -UAGuaCguCUGGaa------CGGCCUU-UCGCG- -5'
25748 5' -53.3 NC_005337.1 + 32205 0.69 0.821536
Target:  5'- gAUguUGCAGGCCUcgaagagGUCGG-AGGCGUg -3'
miRNA:   3'- -UAguACGUCUGGAa------CGGCCuUUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 24351 0.69 0.83899
Target:  5'- --gGUGCAGugCcUGCUGGAGGaguucuccGCGCu -3'
miRNA:   3'- uagUACGUCugGaACGGCCUUU--------CGCG- -5'
25748 5' -53.3 NC_005337.1 + 37099 0.69 0.83899
Target:  5'- -gCGUGCGGAagUUGUCGGggGGCc- -3'
miRNA:   3'- uaGUACGUCUggAACGGCCuuUCGcg -5'
25748 5' -53.3 NC_005337.1 + 100024 0.7 0.764991
Target:  5'- ----cGCGGACCgUGCUGG-AGGUGCu -3'
miRNA:   3'- uaguaCGUCUGGaACGGCCuUUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 38153 0.7 0.764991
Target:  5'- uAUCAUGgAGAauCCUcUGCCGGAAAuGCuGCu -3'
miRNA:   3'- -UAGUACgUCU--GGA-ACGGCCUUU-CG-CG- -5'
25748 5' -53.3 NC_005337.1 + 88948 0.71 0.755058
Target:  5'- ----cGCGGACCgcgcggaGgCGGAGGGCGCg -3'
miRNA:   3'- uaguaCGUCUGGaa-----CgGCCUUUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 10165 0.77 0.417381
Target:  5'- -gCGUcCAGcCCUUGCCGGcGAGCGCg -3'
miRNA:   3'- uaGUAcGUCuGGAACGGCCuUUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 38469 0.77 0.426569
Target:  5'- uUCAUGCGGugCgcGCCGGGcgcGCGCg -3'
miRNA:   3'- uAGUACGUCugGaaCGGCCUuu-CGCG- -5'
25748 5' -53.3 NC_005337.1 + 121444 0.72 0.682817
Target:  5'- --gGUGaUAGACCUgcUGCUGGAcgcGGGCGCg -3'
miRNA:   3'- uagUAC-GUCUGGA--ACGGCCU---UUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 25806 0.72 0.703838
Target:  5'- -cCGUGCAGcUCUUGgCGGAggcguacgagaaGAGCGCg -3'
miRNA:   3'- uaGUACGUCuGGAACgGCCU------------UUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 64899 0.71 0.714255
Target:  5'- -aCAgagGCGGACCUggcgcuagcgGCCggcccgcgcgGGAAAGCGCg -3'
miRNA:   3'- uaGUa--CGUCUGGAa---------CGG----------CCUUUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 37495 0.71 0.724596
Target:  5'- --gGUGCAGcAUgUUGCUGcGGAAGCGCu -3'
miRNA:   3'- uagUACGUC-UGgAACGGC-CUUUCGCG- -5'
25748 5' -53.3 NC_005337.1 + 32568 0.71 0.741972
Target:  5'- --aGUGCGGGCCUccgacacggugcacUGCCGGAAGaaauCGCg -3'
miRNA:   3'- uagUACGUCUGGA--------------ACGGCCUUUc---GCG- -5'
25748 5' -53.3 NC_005337.1 + 40424 0.71 0.755058
Target:  5'- cUCGUGCAGGcgcuCCUU-CCGGA--GCGCa -3'
miRNA:   3'- uAGUACGUCU----GGAAcGGCCUuuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.