miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25749 3' -54 NC_005337.1 + 127508 0.66 0.945362
Target:  5'- cCGGCGGGaacACCGcgcugcacUACAUgGCgAUGUAc -3'
miRNA:   3'- -GCCGUCCa--UGGC--------AUGUAgCGgUACAU- -5'
25749 3' -54 NC_005337.1 + 3333 0.66 0.945362
Target:  5'- gCGGCAGacgaUGCCGUAgcccccgGUgGCCAUGUGg -3'
miRNA:   3'- -GCCGUCc---AUGGCAUg------UAgCGGUACAU- -5'
25749 3' -54 NC_005337.1 + 4366 0.66 0.945362
Target:  5'- gCGGCGGuGUugUuGUACccggcCGCCAUGUGc -3'
miRNA:   3'- -GCCGUC-CAugG-CAUGua---GCGGUACAU- -5'
25749 3' -54 NC_005337.1 + 34894 0.66 0.940695
Target:  5'- cCGGCAGGUgguGCCGcGCGUCcacgggcgucaaGUCAUGc- -3'
miRNA:   3'- -GCCGUCCA---UGGCaUGUAG------------CGGUACau -5'
25749 3' -54 NC_005337.1 + 16025 0.66 0.940695
Target:  5'- cCGGCAGGUACaCGcgcUGCggCGCC-UGc- -3'
miRNA:   3'- -GCCGUCCAUG-GC---AUGuaGCGGuACau -5'
25749 3' -54 NC_005337.1 + 59874 0.66 0.939246
Target:  5'- uGGC-GGUGCCagagccccggagauGUACGUcucgcgcagcugCGCCAUGUAc -3'
miRNA:   3'- gCCGuCCAUGG--------------CAUGUA------------GCGGUACAU- -5'
25749 3' -54 NC_005337.1 + 102253 0.66 0.935777
Target:  5'- aCGGcCGGGUG-CGUcacCGUgGCCAUGUAc -3'
miRNA:   3'- -GCC-GUCCAUgGCAu--GUAgCGGUACAU- -5'
25749 3' -54 NC_005337.1 + 16297 0.66 0.935777
Target:  5'- gGGCGGGUGCUggugcugcgGUACGUCaaGCUGUGc- -3'
miRNA:   3'- gCCGUCCAUGG---------CAUGUAG--CGGUACau -5'
25749 3' -54 NC_005337.1 + 95597 0.66 0.930608
Target:  5'- uCGGcCGGGUGCa--GCAgcgCGCCAUGg- -3'
miRNA:   3'- -GCC-GUCCAUGgcaUGUa--GCGGUACau -5'
25749 3' -54 NC_005337.1 + 15998 0.66 0.930608
Target:  5'- gGGCAGGUACaGgaagGCGuUCGCCGgaGUGa -3'
miRNA:   3'- gCCGUCCAUGgCa---UGU-AGCGGUa-CAU- -5'
25749 3' -54 NC_005337.1 + 121554 0.67 0.921812
Target:  5'- gGGCuGGaGgCGUACGUCGCCuucgccgagcaccgcAUGUAc -3'
miRNA:   3'- gCCGuCCaUgGCAUGUAGCGG---------------UACAU- -5'
25749 3' -54 NC_005337.1 + 4031 0.67 0.919511
Target:  5'- uGuGCAGGUACgCGUGCAgcggCGUCuUGUc -3'
miRNA:   3'- gC-CGUCCAUG-GCAUGUa---GCGGuACAu -5'
25749 3' -54 NC_005337.1 + 74462 0.67 0.915986
Target:  5'- cCGGCGGGUucgacgucucgcuggACgCGUACAUCGUgCggGUAg -3'
miRNA:   3'- -GCCGUCCA---------------UG-GCAUGUAGCG-GuaCAU- -5'
25749 3' -54 NC_005337.1 + 4783 0.67 0.913585
Target:  5'- aCGcGCGGGU-CCGUGCA-CGCCcccGUGa -3'
miRNA:   3'- -GC-CGUCCAuGGCAUGUaGCGGua-CAU- -5'
25749 3' -54 NC_005337.1 + 118496 0.67 0.907408
Target:  5'- cCGGC-GGUgACCGUGCGggugaccggCGUCGUGUc -3'
miRNA:   3'- -GCCGuCCA-UGGCAUGUa--------GCGGUACAu -5'
25749 3' -54 NC_005337.1 + 41424 0.67 0.907408
Target:  5'- gCGGgAGcGUGCCGaACGUCGCguUGa- -3'
miRNA:   3'- -GCCgUC-CAUGGCaUGUAGCGguACau -5'
25749 3' -54 NC_005337.1 + 25661 0.67 0.900981
Target:  5'- aCGGCA-GUGCCGUcuACAcCGCCG-GUGc -3'
miRNA:   3'- -GCCGUcCAUGGCA--UGUaGCGGUaCAU- -5'
25749 3' -54 NC_005337.1 + 34158 0.67 0.900981
Target:  5'- uGGCGGGgaagGCgGUcACGUCGCgGUGc- -3'
miRNA:   3'- gCCGUCCa---UGgCA-UGUAGCGgUACau -5'
25749 3' -54 NC_005337.1 + 65869 0.67 0.900981
Target:  5'- aCGGacgGGGUGCUGgccGCgGUCGCCGUGa- -3'
miRNA:   3'- -GCCg--UCCAUGGCa--UG-UAGCGGUACau -5'
25749 3' -54 NC_005337.1 + 90256 0.67 0.900981
Target:  5'- gGGCAGGUACCGguaGCAcgCGgacaCCGUGc- -3'
miRNA:   3'- gCCGUCCAUGGCa--UGUa-GC----GGUACau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.