miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25749 3' -54 NC_005337.1 + 6742 1.07 0.004519
Target:  5'- cCGGCAGGUACCGUACAUCGCCAUGUAg -3'
miRNA:   3'- -GCCGUCCAUGGCAUGUAGCGGUACAU- -5'
25749 3' -54 NC_005337.1 + 4476 0.82 0.203853
Target:  5'- gCGGCAGGUGCUcUGCAUCGCCAgcacGUGc -3'
miRNA:   3'- -GCCGUCCAUGGcAUGUAGCGGUa---CAU- -5'
25749 3' -54 NC_005337.1 + 2444 0.75 0.481543
Target:  5'- aGuGCAGGUACgUGUGCAgCGCCGUGUu -3'
miRNA:   3'- gC-CGUCCAUG-GCAUGUaGCGGUACAu -5'
25749 3' -54 NC_005337.1 + 97811 0.72 0.644833
Target:  5'- gCGGCAGGUggugaagACCGUGCGUcCGCCc---- -3'
miRNA:   3'- -GCCGUCCA-------UGGCAUGUA-GCGGuacau -5'
25749 3' -54 NC_005337.1 + 18522 0.72 0.677337
Target:  5'- gGGCAGaaggaagagGCCGUACcgCGCCAUGc- -3'
miRNA:   3'- gCCGUCca-------UGGCAUGuaGCGGUACau -5'
25749 3' -54 NC_005337.1 + 127582 0.72 0.687755
Target:  5'- aGGCGGGcgcaGCCGUggACGUCGCCGaGUc -3'
miRNA:   3'- gCCGUCCa---UGGCA--UGUAGCGGUaCAu -5'
25749 3' -54 NC_005337.1 + 118051 0.71 0.698125
Target:  5'- uGGCAGGUAUCGcgaaGUCGCCGcggGUGu -3'
miRNA:   3'- gCCGUCCAUGGCaug-UAGCGGUa--CAU- -5'
25749 3' -54 NC_005337.1 + 69466 0.7 0.758766
Target:  5'- gGGCAGGUACCGggaggcgACGUCcCCGUc-- -3'
miRNA:   3'- gCCGUCCAUGGCa------UGUAGcGGUAcau -5'
25749 3' -54 NC_005337.1 + 25298 0.7 0.768517
Target:  5'- aCGGCGGGcggGCCGcGCGUCGaCCggcgcGUGUAc -3'
miRNA:   3'- -GCCGUCCa--UGGCaUGUAGC-GG-----UACAU- -5'
25749 3' -54 NC_005337.1 + 98481 0.7 0.787624
Target:  5'- aGGCAGGggcgcGCCGgcgGCGUcCGUCAUGa- -3'
miRNA:   3'- gCCGUCCa----UGGCa--UGUA-GCGGUACau -5'
25749 3' -54 NC_005337.1 + 62422 0.69 0.827472
Target:  5'- gCGGCAGGaUGCCGggcaccgucucauCGUgGCCGUGg- -3'
miRNA:   3'- -GCCGUCC-AUGGCau-----------GUAgCGGUACau -5'
25749 3' -54 NC_005337.1 + 13077 0.69 0.840263
Target:  5'- aCGGCguuacuuguAGGcguUACCGUACAguuucacuauugcUCGCUAUGUAc -3'
miRNA:   3'- -GCCG---------UCC---AUGGCAUGU-------------AGCGGUACAU- -5'
25749 3' -54 NC_005337.1 + 104253 0.69 0.8411
Target:  5'- gGGCAcGGU-CgCGUACGUCGCCGa--- -3'
miRNA:   3'- gCCGU-CCAuG-GCAUGUAGCGGUacau -5'
25749 3' -54 NC_005337.1 + 75692 0.68 0.856614
Target:  5'- aCGGCcaaGUacuccgcGCCGgagaGCAUCGCCGUGUAc -3'
miRNA:   3'- -GCCGuc-CA-------UGGCa---UGUAGCGGUACAU- -5'
25749 3' -54 NC_005337.1 + 52319 0.68 0.857409
Target:  5'- aCGGCAucauGUACCGgcuCAUgucCGCCGUGUGc -3'
miRNA:   3'- -GCCGUc---CAUGGCau-GUA---GCGGUACAU- -5'
25749 3' -54 NC_005337.1 + 36934 0.68 0.872858
Target:  5'- gCGGCGGGUacuucaccaggaACCGcGCcacCGCCGUGUu -3'
miRNA:   3'- -GCCGUCCA------------UGGCaUGua-GCGGUACAu -5'
25749 3' -54 NC_005337.1 + 83945 0.68 0.872858
Target:  5'- gCGGCGGGUACCGgGCGgucCGCgCAg--- -3'
miRNA:   3'- -GCCGUCCAUGGCaUGUa--GCG-GUacau -5'
25749 3' -54 NC_005337.1 + 35003 0.67 0.89431
Target:  5'- aGGCAGacgGCCGUgccgaaccccGCGUCGCCGUc-- -3'
miRNA:   3'- gCCGUCca-UGGCA----------UGUAGCGGUAcau -5'
25749 3' -54 NC_005337.1 + 65869 0.67 0.900981
Target:  5'- aCGGacgGGGUGCUGgccGCgGUCGCCGUGa- -3'
miRNA:   3'- -GCCg--UCCAUGGCa--UG-UAGCGGUACau -5'
25749 3' -54 NC_005337.1 + 90256 0.67 0.900981
Target:  5'- gGGCAGGUACCGguaGCAcgCGgacaCCGUGc- -3'
miRNA:   3'- gCCGUCCAUGGCa--UGUa-GC----GGUACau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.