miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25749 5' -59.6 NC_005337.1 + 59829 0.66 0.769242
Target:  5'- ---aCCCGCCGGgGuacaccaugagcUCGG-GCUCGCCu -3'
miRNA:   3'- acaaGGGCGGCCaC------------AGCUaCGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 124439 0.66 0.769242
Target:  5'- ---gCgCGCgGGUG-CGggGCCUGCCc -3'
miRNA:   3'- acaaGgGCGgCCACaGCuaCGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 53871 0.66 0.768323
Target:  5'- --cUCCUGCUGGUucugcaagcaggcGUCGGggcgGCcCCGCUg -3'
miRNA:   3'- acaAGGGCGGCCA-------------CAGCUa---CG-GGCGG- -5'
25749 5' -59.6 NC_005337.1 + 39581 0.66 0.759998
Target:  5'- ---aCCgGCCGcGUGUUcGUGCCCgaGCCc -3'
miRNA:   3'- acaaGGgCGGC-CACAGcUACGGG--CGG- -5'
25749 5' -59.6 NC_005337.1 + 85293 0.66 0.759998
Target:  5'- ---aCCUGCUGGUccuugacggUGGUGCUCGCCu -3'
miRNA:   3'- acaaGGGCGGCCAca-------GCUACGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 70344 0.66 0.759998
Target:  5'- cGgcgUUCCGCaCGG---CGGUGCgCCGCCg -3'
miRNA:   3'- aCa--AGGGCG-GCCacaGCUACG-GGCGG- -5'
25749 5' -59.6 NC_005337.1 + 53754 0.66 0.759998
Target:  5'- --cUCCgCGCCccGGgccUCGGcgUGCCCGCCc -3'
miRNA:   3'- acaAGG-GCGG--CCac-AGCU--ACGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 31575 0.66 0.759998
Target:  5'- aUGUUCCCGauguaGGUcUCGA-GCUCGUCc -3'
miRNA:   3'- -ACAAGGGCgg---CCAcAGCUaCGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 4302 0.66 0.758136
Target:  5'- cGgcgUCCUGCCGGUGuUCGAgaccacagagggGUCggCGCCc -3'
miRNA:   3'- aCa--AGGGCGGCCAC-AGCUa-----------CGG--GCGG- -5'
25749 5' -59.6 NC_005337.1 + 76201 0.66 0.750647
Target:  5'- cUGUUgUCCGCCacGGUGUCGGUGCggUUGUg -3'
miRNA:   3'- -ACAA-GGGCGG--CCACAGCUACG--GGCGg -5'
25749 5' -59.6 NC_005337.1 + 28175 0.66 0.744987
Target:  5'- gGUgcgUCCGCUGGUGcccuagagcaugcccUCGuacGCCCGCg -3'
miRNA:   3'- aCAa--GGGCGGCCAC---------------AGCua-CGGGCGg -5'
25749 5' -59.6 NC_005337.1 + 69107 0.66 0.741195
Target:  5'- --cUCCUGCCGGgagGgCGAgaccaagaGCCaCGCCa -3'
miRNA:   3'- acaAGGGCGGCCa--CaGCUa-------CGG-GCGG- -5'
25749 5' -59.6 NC_005337.1 + 116573 0.66 0.741195
Target:  5'- gUGggCUCGCUGaccUCGcccAUGCCCGCCa -3'
miRNA:   3'- -ACaaGGGCGGCcacAGC---UACGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 7223 0.66 0.731654
Target:  5'- ---aCCCGCCuucGGUG-CGcaccuccgcGCCCGCCg -3'
miRNA:   3'- acaaGGGCGG---CCACaGCua-------CGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 115625 0.66 0.731654
Target:  5'- ---gCCCGCCGGcGgcggCGcgGC-CGCCa -3'
miRNA:   3'- acaaGGGCGGCCaCa---GCuaCGgGCGG- -5'
25749 5' -59.6 NC_005337.1 + 38516 0.66 0.731654
Target:  5'- cGggCgCGCCuGGUG-CaggGCCCGCCg -3'
miRNA:   3'- aCaaGgGCGG-CCACaGcuaCGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 76408 0.66 0.731654
Target:  5'- aUGcUCUCGCacaGGUGUCcccUGgCCGCCu -3'
miRNA:   3'- -ACaAGGGCGg--CCACAGcu-ACgGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 47906 0.66 0.726852
Target:  5'- aUGUUCCCGCacaagaccgugcccCGG-GUCGuugcggaggagGCCgGCCu -3'
miRNA:   3'- -ACAAGGGCG--------------GCCaCAGCua---------CGGgCGG- -5'
25749 5' -59.6 NC_005337.1 + 110327 0.66 0.72203
Target:  5'- cGUucggCCCgGCCGGgcggcGUCGcgcgcGCCUGCCg -3'
miRNA:   3'- aCAa---GGG-CGGCCa----CAGCua---CGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 31166 0.66 0.72203
Target:  5'- --aUgCCGCacucCGGgagGUCGAUGUCgGCCg -3'
miRNA:   3'- acaAgGGCG----GCCa--CAGCUACGGgCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.