miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25749 5' -59.6 NC_005337.1 + 6779 1.12 0.000838
Target:  5'- gUGUUCCCGCCGGUGUCGAUGCCCGCCg -3'
miRNA:   3'- -ACAAGGGCGGCCACAGCUACGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 38688 0.83 0.087848
Target:  5'- cUGUUCgCCGCCuGGUGUCGGcggcgGCCCGUCg -3'
miRNA:   3'- -ACAAG-GGCGG-CCACAGCUa----CGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 97710 0.75 0.287142
Target:  5'- -cUUCUCGCCGGUGg-GGUgGCUCGCCg -3'
miRNA:   3'- acAAGGGCGGCCACagCUA-CGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 131410 0.74 0.328577
Target:  5'- gUGUUCCCGCUGGcG-CGcgGCuCCGCg -3'
miRNA:   3'- -ACAAGGGCGGCCaCaGCuaCG-GGCGg -5'
25749 5' -59.6 NC_005337.1 + 27502 0.73 0.335898
Target:  5'- ---aCCCGUCGGgGUCGAUGUCgugCGCCa -3'
miRNA:   3'- acaaGGGCGGCCaCAGCUACGG---GCGG- -5'
25749 5' -59.6 NC_005337.1 + 99308 0.73 0.335898
Target:  5'- cGUUCCgcagCGCCGGgucGUCGAcUGCUCGCa -3'
miRNA:   3'- aCAAGG----GCGGCCa--CAGCU-ACGGGCGg -5'
25749 5' -59.6 NC_005337.1 + 122039 0.72 0.398674
Target:  5'- ---cCCCGUCGGUGcCGAgUGCCgCGUCg -3'
miRNA:   3'- acaaGGGCGGCCACaGCU-ACGG-GCGG- -5'
25749 5' -59.6 NC_005337.1 + 13314 0.72 0.424076
Target:  5'- aGUggCCC-UUGGcGUCGAUGCUCGCCa -3'
miRNA:   3'- aCAa-GGGcGGCCaCAGCUACGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 62040 0.71 0.432756
Target:  5'- aUGagCUCGCCGGUGUUGuUGCCgaagauguugugCGCCu -3'
miRNA:   3'- -ACaaGGGCGGCCACAGCuACGG------------GCGG- -5'
25749 5' -59.6 NC_005337.1 + 95746 0.71 0.441539
Target:  5'- cGUUCCCGCC-GUGcaCGAUcCCCGCg -3'
miRNA:   3'- aCAAGGGCGGcCACa-GCUAcGGGCGg -5'
25749 5' -59.6 NC_005337.1 + 29666 0.71 0.441539
Target:  5'- cGUgcUCCCG-CGGUGgcgcCGuAUGCUCGCCg -3'
miRNA:   3'- aCA--AGGGCgGCCACa---GC-UACGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 80369 0.71 0.441539
Target:  5'- cGUUCgCGCCGGUcgcggacccgGUCGuGUGgCUGCCg -3'
miRNA:   3'- aCAAGgGCGGCCA----------CAGC-UACgGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 99858 0.71 0.441539
Target:  5'- ---gCCCGCCaGGcgGUCGG-GCCUGCCc -3'
miRNA:   3'- acaaGGGCGG-CCa-CAGCUaCGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 45515 0.71 0.450421
Target:  5'- --cUCCaCGUCGGUGUCGgcGCCgcggaugacgagCGCCa -3'
miRNA:   3'- acaAGG-GCGGCCACAGCuaCGG------------GCGG- -5'
25749 5' -59.6 NC_005337.1 + 116276 0.71 0.451315
Target:  5'- aUGgcUCCGCCGGUGaUCGAggaguaccucggcuCCCGCCc -3'
miRNA:   3'- -ACaaGGGCGGCCAC-AGCUac------------GGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 46473 0.71 0.459401
Target:  5'- -cUUCCUGgUGGUGUgGGUgGCCCGCg -3'
miRNA:   3'- acAAGGGCgGCCACAgCUA-CGGGCGg -5'
25749 5' -59.6 NC_005337.1 + 133225 0.71 0.459401
Target:  5'- ---cCCCGCCGGccuccCGccGCCCGCCu -3'
miRNA:   3'- acaaGGGCGGCCaca--GCuaCGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 100594 0.71 0.459401
Target:  5'- gGUggcgCCCGCCGGccUCGgcGCCuCGCUg -3'
miRNA:   3'- aCAa---GGGCGGCCacAGCuaCGG-GCGG- -5'
25749 5' -59.6 NC_005337.1 + 133225 0.71 0.459401
Target:  5'- ---cCCCGCCGGccuccCGccGCCCGCCu -3'
miRNA:   3'- acaaGGGCGGCCaca--GCuaCGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 1623 0.71 0.468476
Target:  5'- cGUUCCuCGaUCGGagGUCGAUGCgCGCg -3'
miRNA:   3'- aCAAGG-GC-GGCCa-CAGCUACGgGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.