miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25749 5' -59.6 NC_005337.1 + 132976 0.66 0.72203
Target:  5'- ----gCCGCCGGaUGgacaaccUGCCCGCCg -3'
miRNA:   3'- acaagGGCGGCC-ACagcu---ACGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 86641 0.67 0.712333
Target:  5'- aGUaCCCGgCGGUGgcgCGcagacgcuuguUGUCCGCCu -3'
miRNA:   3'- aCAaGGGCgGCCACa--GCu----------ACGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 75362 0.67 0.712333
Target:  5'- gGUcgCCgCGCCGGaGUCc-UGCCgCGCCa -3'
miRNA:   3'- aCAa-GG-GCGGCCaCAGcuACGG-GCGG- -5'
25749 5' -59.6 NC_005337.1 + 71483 0.67 0.702571
Target:  5'- cUGgacgCCaCGCCGGacgCGGUGCCCGaCUu -3'
miRNA:   3'- -ACaa--GG-GCGGCCacaGCUACGGGC-GG- -5'
25749 5' -59.6 NC_005337.1 + 6001 0.67 0.702571
Target:  5'- cGUUgcagaCCGCCGcGUGcagCGgcGUCCGCCc -3'
miRNA:   3'- aCAAg----GGCGGC-CACa--GCuaCGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 125842 0.67 0.702571
Target:  5'- cUGaUCgCCGCCGGaUG-CGAUcCCCGCg -3'
miRNA:   3'- -ACaAG-GGCGGCC-ACaGCUAcGGGCGg -5'
25749 5' -59.6 NC_005337.1 + 118196 0.67 0.702571
Target:  5'- --cUCgCGCCGGUGggCGcgGagCCGCCc -3'
miRNA:   3'- acaAGgGCGGCCACa-GCuaCg-GGCGG- -5'
25749 5' -59.6 NC_005337.1 + 130785 0.67 0.702571
Target:  5'- cUGggCgCCGCCGGUG-CGGcUGCUgCGCUu -3'
miRNA:   3'- -ACaaG-GGCGGCCACaGCU-ACGG-GCGG- -5'
25749 5' -59.6 NC_005337.1 + 34268 0.67 0.693736
Target:  5'- --gUCCgCGCCGGguucuuggugcccaaGUCGAaGgCCGCCa -3'
miRNA:   3'- acaAGG-GCGGCCa--------------CAGCUaCgGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 39262 0.67 0.692752
Target:  5'- --gUCCCGCCGuucgCGGUGgCCGCg -3'
miRNA:   3'- acaAGGGCGGCcacaGCUACgGGCGg -5'
25749 5' -59.6 NC_005337.1 + 2085 0.67 0.692752
Target:  5'- -----gCGCaCGGUGUCGgcGCgCGCCg -3'
miRNA:   3'- acaaggGCG-GCCACAGCuaCGgGCGG- -5'
25749 5' -59.6 NC_005337.1 + 65273 0.67 0.692752
Target:  5'- --aUCCUGUucaCGGUGaCGgcGCUCGCCa -3'
miRNA:   3'- acaAGGGCG---GCCACaGCuaCGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 26729 0.67 0.682885
Target:  5'- cGUUgCCGUCcuUGUCGGUGCUccgguCGCCg -3'
miRNA:   3'- aCAAgGGCGGccACAGCUACGG-----GCGG- -5'
25749 5' -59.6 NC_005337.1 + 122673 0.67 0.682885
Target:  5'- gGUggCCCGCCgGGUGUgCcccUGCUCGCUg -3'
miRNA:   3'- aCAa-GGGCGG-CCACA-Gcu-ACGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 44444 0.67 0.672978
Target:  5'- ----gCCGCCGGaggacGUCGAgcGCCuCGCCg -3'
miRNA:   3'- acaagGGCGGCCa----CAGCUa-CGG-GCGG- -5'
25749 5' -59.6 NC_005337.1 + 75909 0.67 0.672978
Target:  5'- ---cCCCGa-GGUGUCGccGgCCGCCa -3'
miRNA:   3'- acaaGGGCggCCACAGCuaCgGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 21580 0.67 0.66304
Target:  5'- --gUCuuGCCGGUGccugugCGGUaGgCCGCCu -3'
miRNA:   3'- acaAGggCGGCCACa-----GCUA-CgGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 83895 0.68 0.653078
Target:  5'- aGUUgUCCGCCGGguacgGgggCGgcGCCUGCUg -3'
miRNA:   3'- aCAA-GGGCGGCCa----Ca--GCuaCGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 39640 0.68 0.653078
Target:  5'- ---aCCCGgCGGUGUUGGUGCugauauucugugCgGCCa -3'
miRNA:   3'- acaaGGGCgGCCACAGCUACG------------GgCGG- -5'
25749 5' -59.6 NC_005337.1 + 125020 0.68 0.643099
Target:  5'- ---cUCCGUCGGUGaccUUGAUuuuuauucGCCCGCCu -3'
miRNA:   3'- acaaGGGCGGCCAC---AGCUA--------CGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.