miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25749 5' -59.6 NC_005337.1 + 3404 0.68 0.633113
Target:  5'- gUGUUgCCGCUGGaGUUGAgGgCCGUCg -3'
miRNA:   3'- -ACAAgGGCGGCCaCAGCUaCgGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 82996 0.69 0.54403
Target:  5'- cGcUCaCGCCGGUGUCcgccAUGgCCGCCu -3'
miRNA:   3'- aCaAGgGCGGCCACAGc---UACgGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 108969 0.69 0.56358
Target:  5'- ---aCgCGCCGGUcgacgCGcgGCCCGCCc -3'
miRNA:   3'- acaaGgGCGGCCAca---GCuaCGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 42532 0.69 0.573426
Target:  5'- gUGUUCCCGCCGGacgCGcUGCgggCGCUg -3'
miRNA:   3'- -ACAAGGGCGGCCacaGCuACGg--GCGG- -5'
25749 5' -59.6 NC_005337.1 + 109226 0.69 0.583312
Target:  5'- ---gCCCGCaCGGcGcgcagcagcuccUCGGUGUCCGCCg -3'
miRNA:   3'- acaaGGGCG-GCCaC------------AGCUACGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 73451 0.68 0.603178
Target:  5'- aGUUCUucgcgCGgCGGUGcCGcGUGCCCGCg -3'
miRNA:   3'- aCAAGG-----GCgGCCACaGC-UACGGGCGg -5'
25749 5' -59.6 NC_005337.1 + 82199 0.68 0.603178
Target:  5'- aGgaUCCGCUGGggagGUacagcaCGcgGCCCGCCu -3'
miRNA:   3'- aCaaGGGCGGCCa---CA------GCuaCGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 133435 0.68 0.613145
Target:  5'- ---gCCCGCCGccuucGUCGAgcccggGCCCGCg -3'
miRNA:   3'- acaaGGGCGGCca---CAGCUa-----CGGGCGg -5'
25749 5' -59.6 NC_005337.1 + 7125 0.68 0.623126
Target:  5'- cGcgCCCGCgCGGaucagcacgcgGaCGAUGUCCGCCu -3'
miRNA:   3'- aCaaGGGCG-GCCa----------CaGCUACGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 9418 0.7 0.509437
Target:  5'- aUGUugagCUCGCgGGUGgcggccaucugcgccUCGAUGCCCGUg -3'
miRNA:   3'- -ACAa---GGGCGgCCAC---------------AGCUACGGGCGg -5'
25749 5' -59.6 NC_005337.1 + 37683 0.7 0.496232
Target:  5'- cUGUUCaCGCCcGUGUgGAcGCCCGCg -3'
miRNA:   3'- -ACAAGgGCGGcCACAgCUaCGGGCGg -5'
25749 5' -59.6 NC_005337.1 + 1623 0.71 0.468476
Target:  5'- cGUUCCuCGaUCGGagGUCGAUGCgCGCg -3'
miRNA:   3'- aCAAGG-GC-GGCCa-CAGCUACGgGCGg -5'
25749 5' -59.6 NC_005337.1 + 38688 0.83 0.087848
Target:  5'- cUGUUCgCCGCCuGGUGUCGGcggcgGCCCGUCg -3'
miRNA:   3'- -ACAAG-GGCGG-CCACAGCUa----CGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 131410 0.74 0.328577
Target:  5'- gUGUUCCCGCUGGcG-CGcgGCuCCGCg -3'
miRNA:   3'- -ACAAGGGCGGCCaCaGCuaCG-GGCGg -5'
25749 5' -59.6 NC_005337.1 + 27502 0.73 0.335898
Target:  5'- ---aCCCGUCGGgGUCGAUGUCgugCGCCa -3'
miRNA:   3'- acaaGGGCGGCCaCAGCUACGG---GCGG- -5'
25749 5' -59.6 NC_005337.1 + 99308 0.73 0.335898
Target:  5'- cGUUCCgcagCGCCGGgucGUCGAcUGCUCGCa -3'
miRNA:   3'- aCAAGG----GCGGCCa--CAGCU-ACGGGCGg -5'
25749 5' -59.6 NC_005337.1 + 29666 0.71 0.441539
Target:  5'- cGUgcUCCCG-CGGUGgcgcCGuAUGCUCGCCg -3'
miRNA:   3'- aCA--AGGGCgGCCACa---GC-UACGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 100594 0.71 0.459401
Target:  5'- gGUggcgCCCGCCGGccUCGgcGCCuCGCUg -3'
miRNA:   3'- aCAa---GGGCGGCCacAGCuaCGG-GCGG- -5'
25749 5' -59.6 NC_005337.1 + 133225 0.71 0.459401
Target:  5'- ---cCCCGCCGGccuccCGccGCCCGCCu -3'
miRNA:   3'- acaaGGGCGGCCaca--GCuaCGGGCGG- -5'
25749 5' -59.6 NC_005337.1 + 34991 0.71 0.468476
Target:  5'- gGUUCCCuccaggauGuuGGUGUaGAUGCCCuCCa -3'
miRNA:   3'- aCAAGGG--------CggCCACAgCUACGGGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.