miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25752 3' -57.9 NC_005337.1 + 54085 0.66 0.839043
Target:  5'- aGACGCGCGAgcuggaCGGCguguACGG-GCG-CUGc -3'
miRNA:   3'- cCUGCGCGCU------GCCG----UGUCaCGCuGAC- -5'
25752 3' -57.9 NC_005337.1 + 47966 0.66 0.839043
Target:  5'- -cGCGCGCGaguGCGGCGCGGacGCGuccaggccgcACUGc -3'
miRNA:   3'- ccUGCGCGC---UGCCGUGUCa-CGC----------UGAC- -5'
25752 3' -57.9 NC_005337.1 + 42967 0.66 0.839043
Target:  5'- aGGACGaG-GACGGCGCg--GCGACg- -3'
miRNA:   3'- -CCUGCgCgCUGCCGUGucaCGCUGac -5'
25752 3' -57.9 NC_005337.1 + 132106 0.66 0.839043
Target:  5'- --gUGCGCGuCGGCGCcGUGCGcgGCa- -3'
miRNA:   3'- ccuGCGCGCuGCCGUGuCACGC--UGac -5'
25752 3' -57.9 NC_005337.1 + 10294 0.66 0.839043
Target:  5'- uGGCGCGCGcauCGGCGCcGUucGCGuCUa -3'
miRNA:   3'- cCUGCGCGCu--GCCGUGuCA--CGCuGAc -5'
25752 3' -57.9 NC_005337.1 + 86788 0.66 0.839043
Target:  5'- -cACGgGCGGCGGCA-GGUcccGCGACg- -3'
miRNA:   3'- ccUGCgCGCUGCCGUgUCA---CGCUGac -5'
25752 3' -57.9 NC_005337.1 + 109473 0.66 0.834164
Target:  5'- -uGCGCGCGugGGCGCGcuuccggaucucgGCGAucCUGu -3'
miRNA:   3'- ccUGCGCGCugCCGUGUca-----------CGCU--GAC- -5'
25752 3' -57.9 NC_005337.1 + 56138 0.66 0.830876
Target:  5'- --gUGCGCGGCGuGCAgCGGgGCGGCa- -3'
miRNA:   3'- ccuGCGCGCUGC-CGU-GUCaCGCUGac -5'
25752 3' -57.9 NC_005337.1 + 96881 0.66 0.830876
Target:  5'- cGGAUGCGCGGCGuGgACGucgGCGAg-- -3'
miRNA:   3'- -CCUGCGCGCUGC-CgUGUca-CGCUgac -5'
25752 3' -57.9 NC_005337.1 + 38955 0.66 0.830876
Target:  5'- cGACGCGCaccGAuCGGCGCccgAGUGCG-Cg- -3'
miRNA:   3'- cCUGCGCG---CU-GCCGUG---UCACGCuGac -5'
25752 3' -57.9 NC_005337.1 + 73410 0.66 0.830876
Target:  5'- cGGACGCGCGGuCGGaguucCAGgagaucaugaGCGACa- -3'
miRNA:   3'- -CCUGCGCGCU-GCCgu---GUCa---------CGCUGac -5'
25752 3' -57.9 NC_005337.1 + 6203 0.66 0.830876
Target:  5'- cGGGCGCgGCGACuGCAUgugguGGUGCaGCa- -3'
miRNA:   3'- -CCUGCG-CGCUGcCGUG-----UCACGcUGac -5'
25752 3' -57.9 NC_005337.1 + 102241 0.66 0.830876
Target:  5'- uGGCGCGUgcaGACGGCcgGGUGCGuCa- -3'
miRNA:   3'- cCUGCGCG---CUGCCGugUCACGCuGac -5'
25752 3' -57.9 NC_005337.1 + 45894 0.66 0.822532
Target:  5'- cGGACuGCGCGugGGCGUGG-GCGuCc- -3'
miRNA:   3'- -CCUG-CGCGCugCCGUGUCaCGCuGac -5'
25752 3' -57.9 NC_005337.1 + 64232 0.66 0.822532
Target:  5'- cGGGCaGCGCcucuuuGCGGCGCuGcgGCGGCUc -3'
miRNA:   3'- -CCUG-CGCGc-----UGCCGUGuCa-CGCUGAc -5'
25752 3' -57.9 NC_005337.1 + 58730 0.66 0.822532
Target:  5'- uGGGCGCGC--CGGCGCGGgUGCa---- -3'
miRNA:   3'- -CCUGCGCGcuGCCGUGUC-ACGcugac -5'
25752 3' -57.9 NC_005337.1 + 2709 0.66 0.822532
Target:  5'- gGGACGCG-GAgGaGCACgAGcGCGACg- -3'
miRNA:   3'- -CCUGCGCgCUgC-CGUG-UCaCGCUGac -5'
25752 3' -57.9 NC_005337.1 + 39224 0.66 0.822532
Target:  5'- cGGGCguGCGCGACaacGCGCAG-GCGuucCUGc -3'
miRNA:   3'- -CCUG--CGCGCUGc--CGUGUCaCGCu--GAC- -5'
25752 3' -57.9 NC_005337.1 + 53898 0.66 0.822532
Target:  5'- gGGGCGgcccCGCuGGCGGUggagacgcuggACGGUGCGGCc- -3'
miRNA:   3'- -CCUGC----GCG-CUGCCG-----------UGUCACGCUGac -5'
25752 3' -57.9 NC_005337.1 + 123128 0.66 0.822532
Target:  5'- cGuCGUGCGGCGcccguCGCGGUGCGugUu -3'
miRNA:   3'- cCuGCGCGCUGCc----GUGUCACGCugAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.