miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25752 3' -57.9 NC_005337.1 + 65725 0.66 0.821689
Target:  5'- gGGGCGCGCc-CGGCGCcGUcacuagcGCGGCa- -3'
miRNA:   3'- -CCUGCGCGcuGCCGUGuCA-------CGCUGac -5'
25752 3' -57.9 NC_005337.1 + 71484 0.66 0.81402
Target:  5'- uGGACGCcaCGcCGGaCGCGGUGCccGACUu -3'
miRNA:   3'- -CCUGCGc-GCuGCC-GUGUCACG--CUGAc -5'
25752 3' -57.9 NC_005337.1 + 48174 0.66 0.81402
Target:  5'- -cGCGCGCGGaGGCGCuGcUGCGggaGCUGu -3'
miRNA:   3'- ccUGCGCGCUgCCGUGuC-ACGC---UGAC- -5'
25752 3' -57.9 NC_005337.1 + 59693 0.66 0.81402
Target:  5'- cGAUGCGCGACaGCGCGuccgcGUGCcGCg- -3'
miRNA:   3'- cCUGCGCGCUGcCGUGU-----CACGcUGac -5'
25752 3' -57.9 NC_005337.1 + 57144 0.66 0.81402
Target:  5'- uGGACGC-CGugGaGCGCAGcacccgGCGcguGCUGc -3'
miRNA:   3'- -CCUGCGcGCugC-CGUGUCa-----CGC---UGAC- -5'
25752 3' -57.9 NC_005337.1 + 82198 0.66 0.81402
Target:  5'- cGGGCGCGC-ACGGCcgGCGGU-CGAa-- -3'
miRNA:   3'- -CCUGCGCGcUGCCG--UGUCAcGCUgac -5'
25752 3' -57.9 NC_005337.1 + 62382 0.66 0.81316
Target:  5'- aGGACGCgGCGgacgagaaaguccACGGuCGCaagcuGGUGCGGCa- -3'
miRNA:   3'- -CCUGCG-CGC-------------UGCC-GUG-----UCACGCUGac -5'
25752 3' -57.9 NC_005337.1 + 121982 0.66 0.81316
Target:  5'- cGGACaucguGCGCGagcuccuGCGcGCGgGGUGCGACc- -3'
miRNA:   3'- -CCUG-----CGCGC-------UGC-CGUgUCACGCUGac -5'
25752 3' -57.9 NC_005337.1 + 30470 0.66 0.808835
Target:  5'- aGGACaugaGCGCGACGGUgacgugguucccgaaGCAGUuguccGCGAUcuUGg -3'
miRNA:   3'- -CCUG----CGCGCUGCCG---------------UGUCA-----CGCUG--AC- -5'
25752 3' -57.9 NC_005337.1 + 118649 0.66 0.805347
Target:  5'- gGGGCgggGCGCGACGcGCACGGa--GACg- -3'
miRNA:   3'- -CCUG---CGCGCUGC-CGUGUCacgCUGac -5'
25752 3' -57.9 NC_005337.1 + 103383 0.66 0.805347
Target:  5'- uGGACGCGgaGAUGGagcgccuGCAGcGCGACa- -3'
miRNA:   3'- -CCUGCGCg-CUGCCg------UGUCaCGCUGac -5'
25752 3' -57.9 NC_005337.1 + 97067 0.66 0.805347
Target:  5'- -cACGCGCGGC-GCGCGGUG-GuCUGc -3'
miRNA:   3'- ccUGCGCGCUGcCGUGUCACgCuGAC- -5'
25752 3' -57.9 NC_005337.1 + 52143 0.66 0.805347
Target:  5'- uGGACGCGUGuCGcGCGCucaugcgccAGcGCGGCUu -3'
miRNA:   3'- -CCUGCGCGCuGC-CGUG---------UCaCGCUGAc -5'
25752 3' -57.9 NC_005337.1 + 16746 0.66 0.805347
Target:  5'- cGAUGUGCG-CGGuCACGGcGCGccgGCUGa -3'
miRNA:   3'- cCUGCGCGCuGCC-GUGUCaCGC---UGAC- -5'
25752 3' -57.9 NC_005337.1 + 69124 0.66 0.802715
Target:  5'- cGGGCGagcCGCGguccACGGCGgccgccuucgcggcCAGUGCGACc- -3'
miRNA:   3'- -CCUGC---GCGC----UGCCGU--------------GUCACGCUGac -5'
25752 3' -57.9 NC_005337.1 + 66306 0.67 0.796521
Target:  5'- uGGAcCGCGUGagcgccGCGGuCGCGGgcugGCGACa- -3'
miRNA:   3'- -CCU-GCGCGC------UGCC-GUGUCa---CGCUGac -5'
25752 3' -57.9 NC_005337.1 + 78630 0.67 0.796521
Target:  5'- aGACGUuCGAggUGaGCGCGGUGgGGCUGa -3'
miRNA:   3'- cCUGCGcGCU--GC-CGUGUCACgCUGAC- -5'
25752 3' -57.9 NC_005337.1 + 55883 0.67 0.796521
Target:  5'- cGAUGCGUG-CGGCGCAGcauccGCGAg-- -3'
miRNA:   3'- cCUGCGCGCuGCCGUGUCa----CGCUgac -5'
25752 3' -57.9 NC_005337.1 + 94799 0.67 0.796521
Target:  5'- -cGCGCGCGucgcCGGCACGGagGCGuCg- -3'
miRNA:   3'- ccUGCGCGCu---GCCGUGUCa-CGCuGac -5'
25752 3' -57.9 NC_005337.1 + 77466 0.67 0.79563
Target:  5'- uGGugGCGUGcGCGGCgacgcgucccgggGCGGUGCauGGCg- -3'
miRNA:   3'- -CCugCGCGC-UGCCG-------------UGUCACG--CUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.