miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25752 3' -57.9 NC_005337.1 + 123314 0.71 0.541356
Target:  5'- cGGAU-CGCGcCGGC-CAGUGUGGCUa -3'
miRNA:   3'- -CCUGcGCGCuGCCGuGUCACGCUGAc -5'
25752 3' -57.9 NC_005337.1 + 98196 0.73 0.437968
Target:  5'- uGGAgGCGCGucacguCGGaCACGGUcacaagccGCGACUGg -3'
miRNA:   3'- -CCUgCGCGCu-----GCC-GUGUCA--------CGCUGAC- -5'
25752 3' -57.9 NC_005337.1 + 128319 0.73 0.455964
Target:  5'- --uCGCGCG-CGGCGCgAGcGCGACUGc -3'
miRNA:   3'- ccuGCGCGCuGCCGUG-UCaCGCUGAC- -5'
25752 3' -57.9 NC_005337.1 + 68330 0.73 0.459611
Target:  5'- cGGcACGCGCgugcccgugccggagGACGGCGCGGUcGCGAUc- -3'
miRNA:   3'- -CC-UGCGCG---------------CUGCCGUGUCA-CGCUGac -5'
25752 3' -57.9 NC_005337.1 + 110365 0.72 0.483682
Target:  5'- cGGGCGCGCGGgcGCGCGGcaGCGACa- -3'
miRNA:   3'- -CCUGCGCGCUgcCGUGUCa-CGCUGac -5'
25752 3' -57.9 NC_005337.1 + 130769 0.72 0.493101
Target:  5'- uGGAcuuCGCGCaGACcugGGCGCcgccGGUGCGGCUGc -3'
miRNA:   3'- -CCU---GCGCG-CUG---CCGUG----UCACGCUGAC- -5'
25752 3' -57.9 NC_005337.1 + 132592 0.72 0.493101
Target:  5'- cGACGCGCGcuGCGGCuGCGGUucagguucGCGACg- -3'
miRNA:   3'- cCUGCGCGC--UGCCG-UGUCA--------CGCUGac -5'
25752 3' -57.9 NC_005337.1 + 39667 0.72 0.506426
Target:  5'- gGGGCGCGUGGCcccgGGCACGuacGUGCGcuucuucgacacgcgGCUGg -3'
miRNA:   3'- -CCUGCGCGCUG----CCGUGU---CACGC---------------UGAC- -5'
25752 3' -57.9 NC_005337.1 + 28500 0.72 0.512184
Target:  5'- cGGCGCGCGgucgcGCGGCACugcGUGgGGCa- -3'
miRNA:   3'- cCUGCGCGC-----UGCCGUGu--CACgCUGac -5'
25752 3' -57.9 NC_005337.1 + 901 0.73 0.429124
Target:  5'- aGGAgcccgaGCGCGACGaGCGCGGcgGCGGCg- -3'
miRNA:   3'- -CCUg-----CGCGCUGC-CGUGUCa-CGCUGac -5'
25752 3' -57.9 NC_005337.1 + 74936 0.73 0.420386
Target:  5'- -cGCGCGCGGCcGCGCGGaUGCGguGCUGg -3'
miRNA:   3'- ccUGCGCGCUGcCGUGUC-ACGC--UGAC- -5'
25752 3' -57.9 NC_005337.1 + 118999 0.73 0.420386
Target:  5'- uGAUG-GUGaaGCGGCGCAuGUGCGACUGg -3'
miRNA:   3'- cCUGCgCGC--UGCCGUGU-CACGCUGAC- -5'
25752 3' -57.9 NC_005337.1 + 42542 0.84 0.097046
Target:  5'- cGGACGCGCuGCgGGCGCuGGUGCGGCUGc -3'
miRNA:   3'- -CCUGCGCGcUG-CCGUG-UCACGCUGAC- -5'
25752 3' -57.9 NC_005337.1 + 126424 0.83 0.106025
Target:  5'- cGGCGCGCGACGGCGCGcGUGCGcguguaccaccgcgcGCUGu -3'
miRNA:   3'- cCUGCGCGCUGCCGUGU-CACGC---------------UGAC- -5'
25752 3' -57.9 NC_005337.1 + 74904 0.77 0.270101
Target:  5'- cGGGgGCGUGAUGGCGCGGcugGCGGCc- -3'
miRNA:   3'- -CCUgCGCGCUGCCGUGUCa--CGCUGac -5'
25752 3' -57.9 NC_005337.1 + 99646 0.75 0.317236
Target:  5'- cGGACGUGCG-CGGCAUcgccGcGCGGCUGg -3'
miRNA:   3'- -CCUGCGCGCuGCCGUGu---CaCGCUGAC- -5'
25752 3' -57.9 NC_005337.1 + 66077 0.75 0.339255
Target:  5'- cGGACGCggccGCGGCGGCggaggcGCuGUGCGGCg- -3'
miRNA:   3'- -CCUGCG----CGCUGCCG------UGuCACGCUGac -5'
25752 3' -57.9 NC_005337.1 + 128789 0.74 0.370303
Target:  5'- gGGuGCGCGCGAUcaugGGCG-GGUGCGGCUGc -3'
miRNA:   3'- -CC-UGCGCGCUG----CCGUgUCACGCUGAC- -5'
25752 3' -57.9 NC_005337.1 + 29710 0.74 0.378363
Target:  5'- cGGACGCGCGaggcgcgcacGCGcGCGCGGUguuGCGGCg- -3'
miRNA:   3'- -CCUGCGCGC----------UGC-CGUGUCA---CGCUGac -5'
25752 3' -57.9 NC_005337.1 + 63911 0.73 0.411757
Target:  5'- cGGACGCgaccacguGCGGCGGCGCAccgccGUGCGGa-- -3'
miRNA:   3'- -CCUGCG--------CGCUGCCGUGU-----CACGCUgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.