miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25752 5' -53.2 NC_005337.1 + 49528 0.66 0.969037
Target:  5'- aCACCAUCGcGCgcgCGCGGgagaccagcUCcggCGCCGg -3'
miRNA:   3'- -GUGGUAGC-UGaa-GCGUCa--------AGa--GCGGC- -5'
25752 5' -53.2 NC_005337.1 + 124096 0.66 0.969037
Target:  5'- cCGCCAg-GuCUUCGCg---CUCGCCGg -3'
miRNA:   3'- -GUGGUagCuGAAGCGucaaGAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 88463 0.66 0.969037
Target:  5'- aCGCCGUCGAgga-GCAGaacuccgcgCUCGCCa -3'
miRNA:   3'- -GUGGUAGCUgaagCGUCaa-------GAGCGGc -5'
25752 5' -53.2 NC_005337.1 + 116569 0.66 0.965869
Target:  5'- gACCGUgGGC-UCGCuGacCUCGCCc -3'
miRNA:   3'- gUGGUAgCUGaAGCGuCaaGAGCGGc -5'
25752 5' -53.2 NC_005337.1 + 110072 0.66 0.962478
Target:  5'- cCACC-UCGACg-CGCGc--CUCGCCGg -3'
miRNA:   3'- -GUGGuAGCUGaaGCGUcaaGAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 40108 0.66 0.962478
Target:  5'- -uUCGUCGGCaa-GCGGUUCUcCGUCGu -3'
miRNA:   3'- guGGUAGCUGaagCGUCAAGA-GCGGC- -5'
25752 5' -53.2 NC_005337.1 + 29412 0.66 0.962478
Target:  5'- uGCCGUuuauccgggCGGCgaugucgcCGCAGUUCUCGCa- -3'
miRNA:   3'- gUGGUA---------GCUGaa------GCGUCAAGAGCGgc -5'
25752 5' -53.2 NC_005337.1 + 23925 0.66 0.958861
Target:  5'- cCGCCcucCGACUUCGagacgCUCGCCa -3'
miRNA:   3'- -GUGGua-GCUGAAGCgucaaGAGCGGc -5'
25752 5' -53.2 NC_005337.1 + 66807 0.66 0.955011
Target:  5'- aCGCCcUCGACgaaGCGGcggCUgCGCCGg -3'
miRNA:   3'- -GUGGuAGCUGaagCGUCaa-GA-GCGGC- -5'
25752 5' -53.2 NC_005337.1 + 58387 0.66 0.955011
Target:  5'- --aCGUCGGCgggCGCAcGUUCUCggagGCCGc -3'
miRNA:   3'- gugGUAGCUGaa-GCGU-CAAGAG----CGGC- -5'
25752 5' -53.2 NC_005337.1 + 85024 0.66 0.955011
Target:  5'- cCACCAgCGAgcCcUCGCGGgucgaguaCUCGCCGg -3'
miRNA:   3'- -GUGGUaGCU--GaAGCGUCaa------GAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 58371 0.66 0.955011
Target:  5'- gGCCggCGACaccUCGgGGUgCUCGCUGg -3'
miRNA:   3'- gUGGuaGCUGa--AGCgUCAaGAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 95615 0.67 0.950924
Target:  5'- gCGCCAUggCGGCguccgugggCGCGGgcccgCUCGCCa -3'
miRNA:   3'- -GUGGUA--GCUGaa-------GCGUCaa---GAGCGGc -5'
25752 5' -53.2 NC_005337.1 + 111367 0.67 0.950502
Target:  5'- aCGCUGUCG-CUgaagagcUCGCGGUgccgCUCGCgCGg -3'
miRNA:   3'- -GUGGUAGCuGA-------AGCGUCAa---GAGCG-GC- -5'
25752 5' -53.2 NC_005337.1 + 71505 0.67 0.946595
Target:  5'- uGCC--CGACUUCGC-GUUCcacCGCCGc -3'
miRNA:   3'- gUGGuaGCUGAAGCGuCAAGa--GCGGC- -5'
25752 5' -53.2 NC_005337.1 + 65749 0.67 0.946595
Target:  5'- gGCCGgcucCGAC-UCGguGUUCcugaCGCCGg -3'
miRNA:   3'- gUGGUa---GCUGaAGCguCAAGa---GCGGC- -5'
25752 5' -53.2 NC_005337.1 + 101357 0.67 0.946595
Target:  5'- gCGCCAUCGAgcacaCGguGUUCcccUCGCUGa -3'
miRNA:   3'- -GUGGUAGCUgaa--GCguCAAG---AGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 37070 0.67 0.945701
Target:  5'- gACCA-CGAUggccaccauggCGCGGUcgagCUCGCCGg -3'
miRNA:   3'- gUGGUaGCUGaa---------GCGUCAa---GAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 74191 0.67 0.942023
Target:  5'- gGCCgggaGUCGGCgUUCGU-GUUCUCcGCCGu -3'
miRNA:   3'- gUGG----UAGCUG-AAGCGuCAAGAG-CGGC- -5'
25752 5' -53.2 NC_005337.1 + 21412 0.67 0.942023
Target:  5'- gCAUCGUCGACgugggcCGCGGccagCUCGCgGa -3'
miRNA:   3'- -GUGGUAGCUGaa----GCGUCaa--GAGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.