miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25752 5' -53.2 NC_005337.1 + 8117 1.09 0.005295
Target:  5'- aCACCAUCGACUUCGCAGUUCUCGCCGc -3'
miRNA:   3'- -GUGGUAGCUGAAGCGUCAAGAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 67596 0.76 0.516747
Target:  5'- cCACCG-CGGCcaUGCGGUUCUCGUCGa -3'
miRNA:   3'- -GUGGUaGCUGaaGCGUCAAGAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 96541 0.74 0.630021
Target:  5'- cCGCCGUCGACUucUCGCAGaugC-CGCUGc -3'
miRNA:   3'- -GUGGUAGCUGA--AGCGUCaa-GaGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 93942 0.73 0.661375
Target:  5'- gCACCuucuaCGugUUCGC-GUUCUCGCUGu -3'
miRNA:   3'- -GUGGua---GCugAAGCGuCAAGAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 53656 0.73 0.682169
Target:  5'- cCGCCAcgCGcGCUUCGCGGcgugCUCGCUGg -3'
miRNA:   3'- -GUGGUa-GC-UGAAGCGUCaa--GAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 53964 0.73 0.702791
Target:  5'- uGCCG-CGACUcguUCGCGGggCUCGUCa -3'
miRNA:   3'- gUGGUaGCUGA---AGCGUCaaGAGCGGc -5'
25752 5' -53.2 NC_005337.1 + 15828 0.71 0.772493
Target:  5'- gCACCAgaggUCGGCUUCGCacggcgagcgcGGgcuuggcggCUCGCCGg -3'
miRNA:   3'- -GUGGU----AGCUGAAGCG-----------UCaa-------GAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 63446 0.71 0.791377
Target:  5'- gACC--UGGCgUUCGCAGccaUUCUCGCCGa -3'
miRNA:   3'- gUGGuaGCUG-AAGCGUC---AAGAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 112312 0.71 0.800599
Target:  5'- uGCUcgCGAggUCGUAGUUCaCGCCGa -3'
miRNA:   3'- gUGGuaGCUgaAGCGUCAAGaGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 120734 0.7 0.818555
Target:  5'- aACCGUUGACUccgucaaGCGGUUCcgcugaacacUCGCCGa -3'
miRNA:   3'- gUGGUAGCUGAag-----CGUCAAG----------AGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 85489 0.7 0.818555
Target:  5'- cCACCAgcUUGAgcaCGUAGUUCUCGUCGg -3'
miRNA:   3'- -GUGGU--AGCUgaaGCGUCAAGAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 31444 0.69 0.860208
Target:  5'- uGCCGUCGGacUUGCGGaaCUUGCCGc -3'
miRNA:   3'- gUGGUAGCUgaAGCGUCaaGAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 29513 0.69 0.860208
Target:  5'- gCGCCGUgCGAgaUCauGCAGUcgcgcuccaUCUCGCCGa -3'
miRNA:   3'- -GUGGUA-GCUgaAG--CGUCA---------AGAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 57686 0.69 0.860208
Target:  5'- aGCCGUgGACcUCcaccaugauGCAGUUCgCGCCGg -3'
miRNA:   3'- gUGGUAgCUGaAG---------CGUCAAGaGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 103365 0.69 0.867922
Target:  5'- -uCCAUCGg---CGCAGggCUCGCCu -3'
miRNA:   3'- guGGUAGCugaaGCGUCaaGAGCGGc -5'
25752 5' -53.2 NC_005337.1 + 6372 0.69 0.867922
Target:  5'- gCACCGgcUCGGCc-CGCAcGcgCUCGCCGg -3'
miRNA:   3'- -GUGGU--AGCUGaaGCGU-CaaGAGCGGC- -5'
25752 5' -53.2 NC_005337.1 + 76244 0.69 0.889711
Target:  5'- cCGCCGUCGAagagCGCGGc-CUgGCCGa -3'
miRNA:   3'- -GUGGUAGCUgaa-GCGUCaaGAgCGGC- -5'
25752 5' -53.2 NC_005337.1 + 133524 0.68 0.896507
Target:  5'- cCGCCGUCGAggcCGCGGgcgccgcgcUCUCGCCc -3'
miRNA:   3'- -GUGGUAGCUgaaGCGUCa--------AGAGCGGc -5'
25752 5' -53.2 NC_005337.1 + 133524 0.68 0.896507
Target:  5'- cCGCCGUCGAggcCGCGGgcgccgcgcUCUCGCCc -3'
miRNA:   3'- -GUGGUAGCUgaaGCGUCa--------AGAGCGGc -5'
25752 5' -53.2 NC_005337.1 + 119377 0.68 0.896507
Target:  5'- cCACCAUCGGCgccgCGCcaacagcauggAGUcgcgucggaagUCUCGCCc -3'
miRNA:   3'- -GUGGUAGCUGaa--GCG-----------UCA-----------AGAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.