miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25753 3' -56.6 NC_005337.1 + 8749 1.08 0.002946
Target:  5'- uCGGUGGAACGGCGACUCGAAGAGGCGu -3'
miRNA:   3'- -GCCACCUUGCCGCUGAGCUUCUCCGC- -5'
25753 3' -56.6 NC_005337.1 + 65670 0.78 0.268246
Target:  5'- aGGUGGugcccAGCGGCGAgaccCUCGAcGAGGCGu -3'
miRNA:   3'- gCCACC-----UUGCCGCU----GAGCUuCUCCGC- -5'
25753 3' -56.6 NC_005337.1 + 99693 0.78 0.2877
Target:  5'- uGGUGGAccCGGCGACcuUCGAGGAGGa- -3'
miRNA:   3'- gCCACCUu-GCCGCUG--AGCUUCUCCgc -5'
25753 3' -56.6 NC_005337.1 + 19082 0.77 0.308247
Target:  5'- aGGU---GCGGCGAgUUGAAGAGGCGg -3'
miRNA:   3'- gCCAccuUGCCGCUgAGCUUCUCCGC- -5'
25753 3' -56.6 NC_005337.1 + 83989 0.76 0.352645
Target:  5'- uGGUGGucuccAUGGCGGa-CGAGGAGGCGg -3'
miRNA:   3'- gCCACCu----UGCCGCUgaGCUUCUCCGC- -5'
25753 3' -56.6 NC_005337.1 + 12703 0.74 0.463364
Target:  5'- cCGGUGGcguccGCGcGCGcgccgcGCUCGAGGAGGUGc -3'
miRNA:   3'- -GCCACCu----UGC-CGC------UGAGCUUCUCCGC- -5'
25753 3' -56.6 NC_005337.1 + 77466 0.73 0.529997
Target:  5'- uGGUGGcgugcGCGGCGACgCGucccGGGGCGg -3'
miRNA:   3'- gCCACCu----UGCCGCUGaGCuu--CUCCGC- -5'
25753 3' -56.6 NC_005337.1 + 120649 0.72 0.539818
Target:  5'- aGGUGGcccugucccucGGCGGCGACgcccggcuggCGGAGAuGGCGc -3'
miRNA:   3'- gCCACC-----------UUGCCGCUGa---------GCUUCU-CCGC- -5'
25753 3' -56.6 NC_005337.1 + 58212 0.72 0.569624
Target:  5'- gCGGaaGAugGGCGAgCUgGAGGAGGCc -3'
miRNA:   3'- -GCCacCUugCCGCU-GAgCUUCUCCGc -5'
25753 3' -56.6 NC_005337.1 + 76596 0.71 0.620077
Target:  5'- uGGUGGAgguccACGGCuGCUCGAuGAGcGCc -3'
miRNA:   3'- gCCACCU-----UGCCGcUGAGCUuCUC-CGc -5'
25753 3' -56.6 NC_005337.1 + 52211 0.71 0.620077
Target:  5'- uGGUGGAGCGGCG-CUCcagcGGGAugaugcagacgGGCGa -3'
miRNA:   3'- gCCACCUUGCCGCuGAGc---UUCU-----------CCGC- -5'
25753 3' -56.6 NC_005337.1 + 970 0.71 0.630222
Target:  5'- gGGcUGGAGCGGCGgggcuggcgcgGCgcgCGGAG-GGCGg -3'
miRNA:   3'- gCC-ACCUUGCCGC-----------UGa--GCUUCuCCGC- -5'
25753 3' -56.6 NC_005337.1 + 970 0.71 0.630222
Target:  5'- gGGcUGGAGCGGCGgggcuggcgcgGCgcgCGGAG-GGCGg -3'
miRNA:   3'- gCC-ACCUUGCCGC-----------UGa--GCUUCuCCGC- -5'
25753 3' -56.6 NC_005337.1 + 83904 0.71 0.639355
Target:  5'- cCGGguacgGGGGCGGCGccugcuggcccagGCUCGGccGGGCGg -3'
miRNA:   3'- -GCCa----CCUUGCCGC-------------UGAGCUucUCCGC- -5'
25753 3' -56.6 NC_005337.1 + 73257 0.71 0.639355
Target:  5'- uGGUGGA--GGCGuACUCGGaccgcgaGGAGGCc -3'
miRNA:   3'- gCCACCUugCCGC-UGAGCU-------UCUCCGc -5'
25753 3' -56.6 NC_005337.1 + 40351 0.71 0.650511
Target:  5'- aGGUGc-ACGGgGACUUGAGG-GGCGu -3'
miRNA:   3'- gCCACcuUGCCgCUGAGCUUCuCCGC- -5'
25753 3' -56.6 NC_005337.1 + 83235 0.7 0.684835
Target:  5'- cCGGUGGAgcuaggacugcuggaGCcggagccugacuGGCGGCUCGAGGgccGGGCc -3'
miRNA:   3'- -GCCACCU---------------UG------------CCGCUGAGCUUC---UCCGc -5'
25753 3' -56.6 NC_005337.1 + 81318 0.7 0.69085
Target:  5'- gCGGa-GAACGGCGGCgCGAAG-GGCu -3'
miRNA:   3'- -GCCacCUUGCCGCUGaGCUUCuCCGc -5'
25753 3' -56.6 NC_005337.1 + 126141 0.69 0.720628
Target:  5'- uCGGUGGAuguggGCGGCGAgaaCUgCGAAGucgauGGUGu -3'
miRNA:   3'- -GCCACCU-----UGCCGCU---GA-GCUUCu----CCGC- -5'
25753 3' -56.6 NC_005337.1 + 49590 0.69 0.730417
Target:  5'- -cGUGGGAuCGGCGACcaguGGGAGGCGc -3'
miRNA:   3'- gcCACCUU-GCCGCUGagc-UUCUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.